Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SHROOM3Q8TF72 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 AC083880.1-201ENST00000608266 535 ntBASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 ITM2C-210ENST00000620962 501 ntBASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.65■□□□□ 0.9
SHROOM3Q8TF72 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
SHROOM3Q8TF72 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.64■□□□□ 0.9
SHROOM3Q8TF72 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SHROOM3Q8TF72 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 KRT18P68-201ENST00000392293 1000 ntBASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.64■□□□□ 0.89
SHROOM3Q8TF72 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 RPS2P52-201ENST00000469610 820 ntBASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 AL162377.1-201ENST00000618844 1793 ntBASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM3Q8TF72 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
SHROOM3Q8TF72 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.62■□□□□ 0.89
SHROOM3Q8TF72 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM3Q8TF72 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM3Q8TF72 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
SHROOM3Q8TF72 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM3Q8TF72 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.62■□□□□ 0.89
SHROOM3Q8TF72 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.62■□□□□ 0.89
SHROOM3Q8TF72 AC083906.2-201ENST00000511578 360 ntBASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms