Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SRP54P61011 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 AL390719.1-204ENST00000412397 1219 ntBASIC19.95■□□□□ 0.78
SRP54P61011 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.95■□□□□ 0.78
SRP54P61011 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SRP54P61011 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SRP54P61011 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.95■□□□□ 0.78
SRP54P61011 AC233263.1-201ENST00000578059 224 ntBASIC19.95■□□□□ 0.78
SRP54P61011 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SRP54P61011 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.95■□□□□ 0.78
SRP54P61011 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.95■□□□□ 0.78
SRP54P61011 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SRP54P61011 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.95■□□□□ 0.78
SRP54P61011 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SRP54P61011 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 KRT8P36-201ENST00000489121 1440 ntBASIC19.94■□□□□ 0.78
SRP54P61011 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
SRP54P61011 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SRP54P61011 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.94■□□□□ 0.78
SRP54P61011 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
SRP54P61011 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
SRP54P61011 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.94■□□□□ 0.78
SRP54P61011 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 RN7SL471P-201ENST00000580476 299 ntBASIC19.94■□□□□ 0.78
SRP54P61011 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.94■□□□□ 0.78
SRP54P61011 AC069544.1-201ENST00000609399 999 ntBASIC19.94■□□□□ 0.78
SRP54P61011 AL359736.2-201ENST00000621992 437 ntBASIC19.94■□□□□ 0.78
SRP54P61011 AC006557.6-201ENST00000623071 864 ntBASIC19.94■□□□□ 0.78
SRP54P61011 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.94■□□□□ 0.78
SRP54P61011 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SRP54P61011 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SRP54P61011 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.93■□□□□ 0.78
SRP54P61011 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.93■□□□□ 0.78
SRP54P61011 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SRP54P61011 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SRP54P61011 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SRP54P61011 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SRP54P61011 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SRP54P61011 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SRP54P61011 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SRP54P61011 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.93■□□□□ 0.78
SRP54P61011 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SRP54P61011 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SRP54P61011 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SRP54P61011 C1QBPP2-201ENST00000528754 825 ntBASIC19.93■□□□□ 0.78
SRP54P61011 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SRP54P61011 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.93■□□□□ 0.78
SRP54P61011 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SRP54P61011 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.92■□□□□ 0.78
SRP54P61011 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SRP54P61011 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SRP54P61011 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
SRP54P61011 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 RPPH1-201ENST00000516869 333 ntBASIC19.92■□□□□ 0.78
SRP54P61011 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.92■□□□□ 0.78
SRP54P61011 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SRP54P61011 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
SRP54P61011 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SRP54P61011 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
SRP54P61011 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.92■□□□□ 0.78
SRP54P61011 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SRP54P61011 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SRP54P61011 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.92■□□□□ 0.78
SRP54P61011 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.92■□□□□ 0.78
SRP54P61011 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SRP54P61011 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms