Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.82■□□□□ 0.76
HOXC4P09017 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC4P09017 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
HOXC4P09017 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC4P09017 AC093827.2-201ENST00000512654 315 ntBASIC19.82■□□□□ 0.76
HOXC4P09017 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC4P09017 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXC4P09017 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC4P09017 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC4P09017 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC4P09017 AL121829.2-201ENST00000620908 328 ntBASIC19.82■□□□□ 0.76
HOXC4P09017 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
HOXC4P09017 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.82■□□□□ 0.76
HOXC4P09017 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC4P09017 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
HOXC4P09017 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXC4P09017 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HOXC4P09017 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXC4P09017 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.81■□□□□ 0.76
HOXC4P09017 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.81■□□□□ 0.76
HOXC4P09017 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.81■□□□□ 0.76
HOXC4P09017 AL031963.3-201ENST00000606441 850 ntBASIC19.81■□□□□ 0.76
HOXC4P09017 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 KRT8P20-201ENST00000423953 1409 ntBASIC19.81■□□□□ 0.76
HOXC4P09017 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXC4P09017 FP700111.2-201ENST00000619190 1892 ntBASIC19.81■□□□□ 0.76
HOXC4P09017 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HOXC4P09017 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC4P09017 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.8■□□□□ 0.76
HOXC4P09017 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.8■□□□□ 0.76
HOXC4P09017 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.8■□□□□ 0.76
HOXC4P09017 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC4P09017 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.8■□□□□ 0.76
HOXC4P09017 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
HOXC4P09017 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC4P09017 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
HOXC4P09017 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.8■□□□□ 0.76
HOXC4P09017 FAM197Y4-202ENST00000622692 608 ntBASIC19.8■□□□□ 0.76
HOXC4P09017 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.8■□□□□ 0.76
HOXC4P09017 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
HOXC4P09017 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC4P09017 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXC4P09017 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.79■□□□□ 0.76
HOXC4P09017 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.79■□□□□ 0.76
HOXC4P09017 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.79■□□□□ 0.76
HOXC4P09017 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXC4P09017 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC4P09017 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC4P09017 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXC4P09017 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC4P09017 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXC4P09017 KRT8P17-201ENST00000453110 1448 ntBASIC19.78■□□□□ 0.76
HOXC4P09017 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC4P09017 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC4P09017 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC4P09017 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC4P09017 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC4P09017 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXC4P09017 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.78■□□□□ 0.76
HOXC4P09017 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXC4P09017 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.78■□□□□ 0.76
HOXC4P09017 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.78■□□□□ 0.76
HOXC4P09017 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.78■□□□□ 0.76
HOXC4P09017 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
HOXC4P09017 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.78■□□□□ 0.76
HOXC4P09017 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXC4P09017 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms