Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC125437.2-201ENST00000625180 2167 ntBASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHA3Q9Y5H8 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PCDHA3Q9Y5H8 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 MYCNOS-205ENST00000641950 531 ntBASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PCDHA3Q9Y5H8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.14■□□□□ 0.98
PCDHA3Q9Y5H8 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 AC097381.1-201ENST00000429019 1296 ntBASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 AL691432.2-201ENST00000607222 2038 ntBASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 BX119927.1-201ENST00000636596 1552 ntBASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHA3Q9Y5H8 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHA3Q9Y5H8 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms