Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HDAC4P56524 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
HDAC4P56524 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC4P56524 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
HDAC4P56524 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.18■□□□□ 0.98
HDAC4P56524 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.18■□□□□ 0.98
HDAC4P56524 PGM5P4-201ENST00000421970 445 ntBASIC21.18■□□□□ 0.98
HDAC4P56524 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.18■□□□□ 0.98
HDAC4P56524 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HDAC4P56524 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.18■□□□□ 0.98
HDAC4P56524 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC4P56524 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.18■□□□□ 0.98
HDAC4P56524 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.18■□□□□ 0.98
HDAC4P56524 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC4P56524 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HDAC4P56524 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HDAC4P56524 RNF165-205ENST00000588679 2904 ntBASIC21.18■□□□□ 0.98
HDAC4P56524 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HDAC4P56524 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HDAC4P56524 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HDAC4P56524 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HDAC4P56524 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.17■□□□□ 0.98
HDAC4P56524 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HDAC4P56524 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HDAC4P56524 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.17■□□□□ 0.98
HDAC4P56524 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HDAC4P56524 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HDAC4P56524 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.17■□□□□ 0.98
HDAC4P56524 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
HDAC4P56524 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.17■□□□□ 0.98
HDAC4P56524 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
HDAC4P56524 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.17■□□□□ 0.98
HDAC4P56524 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HDAC4P56524 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.17■□□□□ 0.98
HDAC4P56524 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.17■□□□□ 0.98
HDAC4P56524 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.16■□□□□ 0.98
HDAC4P56524 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC4P56524 AL512408.1-201ENST00000569378 2000 ntBASIC21.16■□□□□ 0.98
HDAC4P56524 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.16■□□□□ 0.98
HDAC4P56524 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.16■□□□□ 0.98
HDAC4P56524 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC4P56524 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC4P56524 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC4P56524 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC4P56524 KRT18P68-201ENST00000392293 1000 ntBASIC21.16■□□□□ 0.98
HDAC4P56524 AC006970.2-201ENST00000450065 779 ntBASIC21.16■□□□□ 0.98
HDAC4P56524 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.16■□□□□ 0.98
HDAC4P56524 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.16■□□□□ 0.98
HDAC4P56524 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.16■□□□□ 0.98
HDAC4P56524 AF201337.1-201ENST00000520239 748 ntBASIC21.16■□□□□ 0.98
HDAC4P56524 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC4P56524 AC105036.2-201ENST00000569468 176 ntBASIC21.16■□□□□ 0.98
HDAC4P56524 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.16■□□□□ 0.98
HDAC4P56524 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
HDAC4P56524 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.16■□□□□ 0.98
HDAC4P56524 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.16■□□□□ 0.98
HDAC4P56524 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.16■□□□□ 0.98
HDAC4P56524 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
HDAC4P56524 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.15■□□□□ 0.98
HDAC4P56524 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.15■□□□□ 0.98
HDAC4P56524 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.15■□□□□ 0.98
HDAC4P56524 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HDAC4P56524 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
HDAC4P56524 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HDAC4P56524 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.15■□□□□ 0.98
HDAC4P56524 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.15■□□□□ 0.98
HDAC4P56524 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.15■□□□□ 0.98
HDAC4P56524 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.15■□□□□ 0.98
HDAC4P56524 AC105020.6-201ENST00000621523 1217 ntBASIC21.15■□□□□ 0.98
HDAC4P56524 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 AL162377.1-201ENST00000618844 1793 ntBASIC21.15■□□□□ 0.98
HDAC4P56524 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC4P56524 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.14■□□□□ 0.98
HDAC4P56524 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.14■□□□□ 0.98
HDAC4P56524 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HDAC4P56524 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HDAC4P56524 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
HDAC4P56524 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
HDAC4P56524 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC4P56524 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC4P56524 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
HDAC4P56524 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC4P56524 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.14■□□□□ 0.97
HDAC4P56524 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC4P56524 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
HDAC4P56524 KRT17P1-201ENST00000399211 1546 ntBASIC21.14■□□□□ 0.97
HDAC4P56524 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.14■□□□□ 0.97
HDAC4P56524 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms