Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC25.82■■□□□ 1.72
COL5A3P25940 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC25.82■■□□□ 1.72
COL5A3P25940 AL031963.3-201ENST00000606441 850 ntBASIC25.82■■□□□ 1.72
COL5A3P25940 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC25.82■■□□□ 1.72
COL5A3P25940 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
COL5A3P25940 PARN-205ENST00000539279 1557 ntTSL 2 BASIC25.81■■□□□ 1.72
COL5A3P25940 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.81■■□□□ 1.72
COL5A3P25940 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC25.81■■□□□ 1.72
COL5A3P25940 UNC93B2-201ENST00000285383 730 ntBASIC25.81■■□□□ 1.72
COL5A3P25940 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
COL5A3P25940 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
COL5A3P25940 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
COL5A3P25940 NIFKP9-201ENST00000419265 221 ntBASIC25.81■■□□□ 1.72
COL5A3P25940 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC25.81■■□□□ 1.72
COL5A3P25940 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.81■■□□□ 1.72
COL5A3P25940 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC25.81■■□□□ 1.72
COL5A3P25940 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
COL5A3P25940 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC25.81■■□□□ 1.72
COL5A3P25940 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
COL5A3P25940 PALM-207ENST00000590161 2137 ntTSL 4 BASIC25.81■■□□□ 1.72
COL5A3P25940 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
COL5A3P25940 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
COL5A3P25940 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC25.8■■□□□ 1.72
COL5A3P25940 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC25.8■■□□□ 1.72
COL5A3P25940 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC25.8■■□□□ 1.72
COL5A3P25940 AL355355.2-201ENST00000442321 338 ntBASIC25.8■■□□□ 1.72
COL5A3P25940 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
COL5A3P25940 AP000525.1-201ENST00000608286 694 ntBASIC25.8■■□□□ 1.72
COL5A3P25940 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC25.8■■□□□ 1.72
COL5A3P25940 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
COL5A3P25940 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
COL5A3P25940 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
COL5A3P25940 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC25.8■■□□□ 1.72
COL5A3P25940 F2R-202ENST00000505600 442 ntTSL 2 BASIC25.8■■□□□ 1.72
COL5A3P25940 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC25.8■■□□□ 1.72
COL5A3P25940 GUSBP5-202ENST00000510805 1989 ntBASIC25.8■■□□□ 1.72
COL5A3P25940 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
COL5A3P25940 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC25.79■■□□□ 1.72
COL5A3P25940 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL5A3P25940 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.79■■□□□ 1.72
COL5A3P25940 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC25.79■■□□□ 1.72
COL5A3P25940 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL5A3P25940 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL5A3P25940 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
COL5A3P25940 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL5A3P25940 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
COL5A3P25940 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL5A3P25940 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
COL5A3P25940 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC25.79■■□□□ 1.72
COL5A3P25940 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
COL5A3P25940 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC25.78■■□□□ 1.72
COL5A3P25940 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC25.78■■□□□ 1.72
COL5A3P25940 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC25.78■■□□□ 1.72
COL5A3P25940 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
COL5A3P25940 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC25.78■■□□□ 1.72
COL5A3P25940 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.77■■□□□ 1.72
COL5A3P25940 TERT-206ENST00000508104 2486 ntTSL 5 BASIC25.77■■□□□ 1.72
COL5A3P25940 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
COL5A3P25940 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC25.77■■□□□ 1.72
COL5A3P25940 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.77■■□□□ 1.72
COL5A3P25940 KRT18P57-201ENST00000443599 1254 ntBASIC25.77■■□□□ 1.72
COL5A3P25940 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC25.77■■□□□ 1.72
COL5A3P25940 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC25.77■■□□□ 1.72
COL5A3P25940 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC25.77■■□□□ 1.72
COL5A3P25940 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC25.77■■□□□ 1.72
COL5A3P25940 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC25.77■■□□□ 1.72
COL5A3P25940 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
COL5A3P25940 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
COL5A3P25940 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
COL5A3P25940 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
COL5A3P25940 PNN-205ENST00000556530 601 ntTSL 2 BASIC25.77■■□□□ 1.72
COL5A3P25940 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC25.77■■□□□ 1.72
COL5A3P25940 AC073195.1-201ENST00000607241 877 ntBASIC25.77■■□□□ 1.72
COL5A3P25940 GLDC-219ENST00000640208 420 ntTSL 2 BASIC25.77■■□□□ 1.72
COL5A3P25940 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
COL5A3P25940 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
COL5A3P25940 KRT16P1-201ENST00000399124 1418 ntBASIC25.76■■□□□ 1.71
COL5A3P25940 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC25.76■■□□□ 1.71
COL5A3P25940 AC116562.2-201ENST00000507042 360 ntBASIC25.76■■□□□ 1.71
COL5A3P25940 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC25.76■■□□□ 1.71
COL5A3P25940 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC25.76■■□□□ 1.71
COL5A3P25940 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
COL5A3P25940 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
COL5A3P25940 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
COL5A3P25940 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC25.75■■□□□ 1.71
COL5A3P25940 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
COL5A3P25940 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC25.75■■□□□ 1.71
COL5A3P25940 AL049597.2-201ENST00000565575 961 ntBASIC25.75■■□□□ 1.71
COL5A3P25940 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC25.75■■□□□ 1.71
COL5A3P25940 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC25.75■■□□□ 1.71
COL5A3P25940 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC25.75■■□□□ 1.71
COL5A3P25940 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
COL5A3P25940 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC25.75■■□□□ 1.71
COL5A3P25940 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
COL5A3P25940 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
COL5A3P25940 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
COL5A3P25940 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC25.74■■□□□ 1.71
COL5A3P25940 TERF1P1-201ENST00000311003 1181 ntBASIC25.74■■□□□ 1.71
COL5A3P25940 AC005521.1-201ENST00000393351 872 ntBASIC25.74■■□□□ 1.71
COL5A3P25940 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC25.74■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms