Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DEPDC4Q8N2C3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 BX005040.4-201ENST00000637145 1518 ntBASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 KRT18P14-201ENST00000534205 1250 ntBASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 CCDC92B-201ENST00000575506 885 ntBASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
DEPDC4Q8N2C3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.8■□□□□ 0.6
DEPDC4Q8N2C3 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
DEPDC4Q8N2C3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 DUX4L2-201ENST00000561772 1275 ntBASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 TERF1P2-201ENST00000583350 1212 ntBASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
DEPDC4Q8N2C3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms