Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM3Q53GG5 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 MIR1224-201ENST00000408193 85 ntBASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 AC069152.1-201ENST00000438030 544 ntBASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM3Q53GG5 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
PDLIM3Q53GG5 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PDLIM3Q53GG5 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PDLIM3Q53GG5 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
PDLIM3Q53GG5 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 COX20-201ENST00000366528 568 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 LHPP-203ENST00000392757 840 ntTSL 3 BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 RHEB-204ENST00000472642 900 ntTSL 3 BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM3Q53GG5 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 RPS2P52-201ENST00000469610 820 ntBASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM3Q53GG5 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 AC009237.3-201ENST00000393279 1427 ntBASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 PRORSD1P-201ENST00000295112 541 ntBASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 KRT18P11-201ENST00000435214 1283 ntBASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 AL138781.1-201ENST00000566567 1274 ntBASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 PFKL-212ENST00000628044 129 ntTSL 3 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms