Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC27.27■■□□□ 1.96
MSH5O43196 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH5O43196 AP004607.7-201ENST00000527152 1677 ntBASIC27.27■■□□□ 1.96
MSH5O43196 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH5O43196 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC27.26■■□□□ 1.96
MSH5O43196 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC27.26■■□□□ 1.95
MSH5O43196 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 MIR1224-201ENST00000408193 85 ntBASIC27.26■■□□□ 1.95
MSH5O43196 AL353718.1-201ENST00000451028 517 ntBASIC27.26■■□□□ 1.95
MSH5O43196 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC27.26■■□□□ 1.95
MSH5O43196 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC27.26■■□□□ 1.95
MSH5O43196 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC27.26■■□□□ 1.95
MSH5O43196 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC27.26■■□□□ 1.95
MSH5O43196 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH5O43196 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH5O43196 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH5O43196 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
MSH5O43196 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH5O43196 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH5O43196 ECEL1P3-201ENST00000427961 737 ntBASIC27.25■■□□□ 1.95
MSH5O43196 AC068985.1-201ENST00000463297 703 ntTSL 5 BASIC27.25■■□□□ 1.95
MSH5O43196 AC026366.1-201ENST00000488803 879 ntBASIC27.25■■□□□ 1.95
MSH5O43196 AC034229.4-201ENST00000607861 441 ntBASIC27.25■■□□□ 1.95
MSH5O43196 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
MSH5O43196 AC006927.4-201ENST00000639187 543 ntBASIC27.25■■□□□ 1.95
MSH5O43196 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH5O43196 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH5O43196 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH5O43196 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH5O43196 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC27.24■■□□□ 1.95
MSH5O43196 MME-217ENST00000616757 1315 ntTSL 5 BASIC27.24■■□□□ 1.95
MSH5O43196 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC27.24■■□□□ 1.95
MSH5O43196 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 AC098483.1-201ENST00000438623 955 ntTSL 5 BASIC27.24■■□□□ 1.95
MSH5O43196 OR2A1-AS1-201ENST00000462305 773 ntBASIC27.24■■□□□ 1.95
MSH5O43196 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC27.24■■□□□ 1.95
MSH5O43196 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC27.24■■□□□ 1.95
MSH5O43196 RHOD-202ENST00000532559 538 ntTSL 3 BASIC27.24■■□□□ 1.95
MSH5O43196 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC27.24■■□□□ 1.95
MSH5O43196 MKKS-203ENST00000609375 882 ntTSL 2 BASIC27.24■■□□□ 1.95
MSH5O43196 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC27.24■■□□□ 1.95
MSH5O43196 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC27.24■■□□□ 1.95
MSH5O43196 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC27.24■■□□□ 1.95
MSH5O43196 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC27.24■■□□□ 1.95
MSH5O43196 LMO3-212ENST00000535535 1488 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
MSH5O43196 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC27.24■■□□□ 1.95
MSH5O43196 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH5O43196 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 AL020996.1-203ENST00000536896 2307 ntBASIC27.23■■□□□ 1.95
MSH5O43196 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC27.23■■□□□ 1.95
MSH5O43196 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC27.23■■□□□ 1.95
MSH5O43196 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC27.23■■□□□ 1.95
MSH5O43196 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 AL513283.1-201ENST00000441790 1087 ntTSL 5 BASIC27.23■■□□□ 1.95
MSH5O43196 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC27.23■■□□□ 1.95
MSH5O43196 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC27.23■■□□□ 1.95
MSH5O43196 AL356019.1-201ENST00000553419 748 ntTSL 2 BASIC27.23■■□□□ 1.95
MSH5O43196 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC27.23■■□□□ 1.95
MSH5O43196 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC27.23■■□□□ 1.95
MSH5O43196 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC27.23■■□□□ 1.95
MSH5O43196 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC27.23■■□□□ 1.95
MSH5O43196 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH5O43196 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
MSH5O43196 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC27.22■■□□□ 1.95
MSH5O43196 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH5O43196 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH5O43196 AL691447.1-201ENST00000419456 387 ntBASIC27.22■■□□□ 1.95
MSH5O43196 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
MSH5O43196 HLA-F-220ENST00000434407 884 ntBASIC27.22■■□□□ 1.95
MSH5O43196 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC27.22■■□□□ 1.95
MSH5O43196 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
MSH5O43196 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC27.22■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms