Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.57■□□□□ 0.72
COL28A1Q2UY09 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 POM121L13P-201ENST00000422362 380 ntBASIC19.56■□□□□ 0.72
COL28A1Q2UY09 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 AC113410.3-201ENST00000623366 203 ntBASIC19.56■□□□□ 0.72
COL28A1Q2UY09 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.56■□□□□ 0.72
COL28A1Q2UY09 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.55■□□□□ 0.72
COL28A1Q2UY09 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 AC092865.7-201ENST00000641832 219 ntBASIC19.55■□□□□ 0.72
COL28A1Q2UY09 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL28A1Q2UY09 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL28A1Q2UY09 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 AL135905.2-201ENST00000584934 1404 ntBASIC19.53■□□□□ 0.72
COL28A1Q2UY09 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 AL353708.3-201ENST00000610272 989 ntBASIC19.53■□□□□ 0.72
COL28A1Q2UY09 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL28A1Q2UY09 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms