Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
USH2AO75445 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC9.19□□□□□ -0.94
USH2AO75445 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
USH2AO75445 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC9.19□□□□□ -0.94
USH2AO75445 AC005332.1-201ENST00000577698 1310 ntBASIC9.19□□□□□ -0.94
USH2AO75445 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC9.18□□□□□ -0.94
USH2AO75445 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 NBPF21P-201ENST00000425093 1451 ntBASIC9.18□□□□□ -0.94
USH2AO75445 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC9.18□□□□□ -0.94
USH2AO75445 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 AP005242.2-201ENST00000580065 1175 ntBASIC9.18□□□□□ -0.94
USH2AO75445 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC9.18□□□□□ -0.94
USH2AO75445 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC9.18□□□□□ -0.94
USH2AO75445 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 MCRIP2P1-201ENST00000394346 511 ntBASIC9.18□□□□□ -0.94
USH2AO75445 MESTP1-201ENST00000404287 994 ntBASIC9.18□□□□□ -0.94
USH2AO75445 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC9.18□□□□□ -0.94
USH2AO75445 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC9.18□□□□□ -0.94
USH2AO75445 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC9.18□□□□□ -0.94
USH2AO75445 AL121956.5-201ENST00000625261 221 ntBASIC9.18□□□□□ -0.94
USH2AO75445 AC003102.1-202ENST00000563394 1796 ntBASIC9.18□□□□□ -0.94
USH2AO75445 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC9.18□□□□□ -0.94
USH2AO75445 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC9.18□□□□□ -0.94
USH2AO75445 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC9.18□□□□□ -0.94
USH2AO75445 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC9.18□□□□□ -0.94
USH2AO75445 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC9.18□□□□□ -0.94
USH2AO75445 CYP21A1P-202ENST00000354927 1481 ntBASIC9.18□□□□□ -0.94
USH2AO75445 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 LINC01238-205ENST00000567549 1107 ntBASIC9.18□□□□□ -0.94
USH2AO75445 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC9.18□□□□□ -0.94
USH2AO75445 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
USH2AO75445 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC9.17□□□□□ -0.94
USH2AO75445 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC9.17□□□□□ -0.94
USH2AO75445 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 TSPY5P-201ENST00000426936 936 ntBASIC9.17□□□□□ -0.94
USH2AO75445 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC9.17□□□□□ -0.94
USH2AO75445 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC9.17□□□□□ -0.94
USH2AO75445 GXYLT1P4-201ENST00000613576 1192 ntBASIC9.17□□□□□ -0.94
USH2AO75445 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 MED17-227ENST00000640521 2047 ntTSL 5 BASIC9.17□□□□□ -0.94
USH2AO75445 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC9.17□□□□□ -0.94
USH2AO75445 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC9.17□□□□□ -0.94
USH2AO75445 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 RNF152P1-201ENST00000397754 604 ntBASIC9.17□□□□□ -0.94
USH2AO75445 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
USH2AO75445 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC9.17□□□□□ -0.94
USH2AO75445 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC9.17□□□□□ -0.94
USH2AO75445 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC9.17□□□□□ -0.94
USH2AO75445 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC9.17□□□□□ -0.94
USH2AO75445 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC9.17□□□□□ -0.94
USH2AO75445 CDV3P1-201ENST00000471403 739 ntBASIC9.17□□□□□ -0.94
USH2AO75445 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC9.17□□□□□ -0.94
USH2AO75445 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC9.17□□□□□ -0.94
USH2AO75445 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC9.17□□□□□ -0.94
USH2AO75445 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC9.17□□□□□ -0.94
USH2AO75445 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC9.17□□□□□ -0.94
USH2AO75445 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
USH2AO75445 FXN-203ENST00000396366 922 ntTSL 2 BASIC9.17□□□□□ -0.94
USH2AO75445 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
USH2AO75445 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
USH2AO75445 FAM207BP-201ENST00000447172 505 ntBASIC9.17□□□□□ -0.94
USH2AO75445 EGLN1P1-201ENST00000531623 762 ntBASIC9.17□□□□□ -0.94
USH2AO75445 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC9.17□□□□□ -0.94
USH2AO75445 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC9.16□□□□□ -0.94
USH2AO75445 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
USH2AO75445 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC9.16□□□□□ -0.94
USH2AO75445 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC9.16□□□□□ -0.94
USH2AO75445 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC9.16□□□□□ -0.94
USH2AO75445 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
USH2AO75445 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC9.16□□□□□ -0.94
USH2AO75445 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC9.16□□□□□ -0.94
USH2AO75445 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
USH2AO75445 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
USH2AO75445 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
USH2AO75445 AC137767.1-201ENST00000602918 1920 ntBASIC9.16□□□□□ -0.94
USH2AO75445 PCED1CP-201ENST00000419887 785 ntBASIC9.16□□□□□ -0.94
USH2AO75445 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
USH2AO75445 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC9.16□□□□□ -0.94
USH2AO75445 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC9.16□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms