Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.4■□□□□ 0.54
SSX4O60224 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.4■□□□□ 0.54
SSX4O60224 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.4■□□□□ 0.54
SSX4O60224 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
SSX4O60224 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.39■□□□□ 0.54
SSX4O60224 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SSX4O60224 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SSX4O60224 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSX4O60224 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SSX4O60224 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSX4O60224 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSX4O60224 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SSX4O60224 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.39■□□□□ 0.53
SSX4O60224 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SSX4O60224 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.39■□□□□ 0.53
SSX4O60224 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.39■□□□□ 0.53
SSX4O60224 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.39■□□□□ 0.53
SSX4O60224 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.39■□□□□ 0.53
SSX4O60224 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
SSX4O60224 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.39■□□□□ 0.53
SSX4O60224 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SSX4O60224 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSX4O60224 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.39■□□□□ 0.53
SSX4O60224 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SSX4O60224 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SSX4O60224 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.39■□□□□ 0.53
SSX4O60224 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.39■□□□□ 0.53
SSX4O60224 OXCT2P1-201ENST00000447263 1535 ntBASIC18.39■□□□□ 0.53
SSX4O60224 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.38■□□□□ 0.53
SSX4O60224 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.38■□□□□ 0.53
SSX4O60224 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.38■□□□□ 0.53
SSX4O60224 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.38■□□□□ 0.53
SSX4O60224 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.38■□□□□ 0.53
SSX4O60224 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.38■□□□□ 0.53
SSX4O60224 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.38■□□□□ 0.53
SSX4O60224 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.38■□□□□ 0.53
SSX4O60224 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.38■□□□□ 0.53
SSX4O60224 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SSX4O60224 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SSX4O60224 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SSX4O60224 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 CDCA4P2-201ENST00000441182 718 ntBASIC18.37■□□□□ 0.53
SSX4O60224 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.37■□□□□ 0.53
SSX4O60224 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.37■□□□□ 0.53
SSX4O60224 AC079140.4-201ENST00000507448 529 ntBASIC18.37■□□□□ 0.53
SSX4O60224 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.37■□□□□ 0.53
SSX4O60224 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.37■□□□□ 0.53
SSX4O60224 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.37■□□□□ 0.53
SSX4O60224 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.37■□□□□ 0.53
SSX4O60224 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.37■□□□□ 0.53
SSX4O60224 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
SSX4O60224 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.37■□□□□ 0.53
SSX4O60224 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 AL049796.1-201ENST00000565336 1766 ntBASIC18.37■□□□□ 0.53
SSX4O60224 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.37■□□□□ 0.53
SSX4O60224 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.37■□□□□ 0.53
SSX4O60224 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SSX4O60224 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SSX4O60224 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSX4O60224 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SSX4O60224 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSX4O60224 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SSX4O60224 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.36■□□□□ 0.53
SSX4O60224 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.36■□□□□ 0.53
SSX4O60224 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SSX4O60224 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.36■□□□□ 0.53
SSX4O60224 AC026185.1-201ENST00000445748 174 ntBASIC18.36■□□□□ 0.53
SSX4O60224 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms