Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VPS13CQ709C8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS13CQ709C8 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13CQ709C8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS13CQ709C8 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS13CQ709C8 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS13CQ709C8 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS13CQ709C8 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13CQ709C8 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VPS13CQ709C8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13CQ709C8 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS13CQ709C8 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13CQ709C8 FAM99A-202ENST00000538190 1989 ntBASIC17.16■□□□□ 0.34
VPS13CQ709C8 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VPS13CQ709C8 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13CQ709C8 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS13CQ709C8 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS13CQ709C8 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS13CQ709C8 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS13CQ709C8 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13CQ709C8 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13CQ709C8 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VPS13CQ709C8 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13CQ709C8 AC005521.1-201ENST00000393351 872 ntBASIC17.15■□□□□ 0.34
VPS13CQ709C8 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VPS13CQ709C8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13CQ709C8 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13CQ709C8 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13CQ709C8 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13CQ709C8 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13CQ709C8 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS13CQ709C8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13CQ709C8 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.15■□□□□ 0.34
VPS13CQ709C8 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS13CQ709C8 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS13CQ709C8 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS13CQ709C8 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS13CQ709C8 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.14■□□□□ 0.34
VPS13CQ709C8 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.14■□□□□ 0.34
VPS13CQ709C8 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.14■□□□□ 0.34
VPS13CQ709C8 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.14■□□□□ 0.34
VPS13CQ709C8 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.14■□□□□ 0.34
VPS13CQ709C8 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
VPS13CQ709C8 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS13CQ709C8 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.14■□□□□ 0.33
VPS13CQ709C8 AC113410.3-201ENST00000623366 203 ntBASIC17.14■□□□□ 0.33
VPS13CQ709C8 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS13CQ709C8 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.14■□□□□ 0.33
VPS13CQ709C8 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13CQ709C8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
VPS13CQ709C8 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
VPS13CQ709C8 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS13CQ709C8 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS13CQ709C8 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS13CQ709C8 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 NUDT16P1-203ENST00000513809 620 ntBASIC17.13■□□□□ 0.33
VPS13CQ709C8 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.13■□□□□ 0.33
VPS13CQ709C8 AF186192.3-201ENST00000583427 947 ntBASIC17.13■□□□□ 0.33
VPS13CQ709C8 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS13CQ709C8 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
VPS13CQ709C8 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS13CQ709C8 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS13CQ709C8 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS13CQ709C8 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13CQ709C8 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS13CQ709C8 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VPS13CQ709C8 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS13CQ709C8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13CQ709C8 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13CQ709C8 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VPS13CQ709C8 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13CQ709C8 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13CQ709C8 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13CQ709C8 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.12■□□□□ 0.33
VPS13CQ709C8 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13CQ709C8 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13CQ709C8 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms