Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.76■□□□□ 0.91
USP39Q53GS9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.75■□□□□ 0.91
USP39Q53GS9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
USP39Q53GS9 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.75■□□□□ 0.91
USP39Q53GS9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
USP39Q53GS9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.75■□□□□ 0.91
USP39Q53GS9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.75■□□□□ 0.91
USP39Q53GS9 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
USP39Q53GS9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
USP39Q53GS9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP39Q53GS9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.75■□□□□ 0.91
USP39Q53GS9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
USP39Q53GS9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.74■□□□□ 0.91
USP39Q53GS9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP39Q53GS9 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
USP39Q53GS9 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
USP39Q53GS9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
USP39Q53GS9 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.74■□□□□ 0.91
USP39Q53GS9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP39Q53GS9 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.74■□□□□ 0.91
USP39Q53GS9 Z99916.2-201ENST00000604037 246 ntBASIC20.74■□□□□ 0.91
USP39Q53GS9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.74■□□□□ 0.91
USP39Q53GS9 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
USP39Q53GS9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP39Q53GS9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP39Q53GS9 AC026310.3-201ENST00000625186 2373 ntBASIC20.73■□□□□ 0.91
USP39Q53GS9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
USP39Q53GS9 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.73■□□□□ 0.91
USP39Q53GS9 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.73■□□□□ 0.91
USP39Q53GS9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP39Q53GS9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
USP39Q53GS9 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.73■□□□□ 0.91
USP39Q53GS9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
USP39Q53GS9 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.73■□□□□ 0.91
USP39Q53GS9 AC069544.1-201ENST00000609399 999 ntBASIC20.73■□□□□ 0.91
USP39Q53GS9 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
USP39Q53GS9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
USP39Q53GS9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP39Q53GS9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP39Q53GS9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.72■□□□□ 0.91
USP39Q53GS9 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 SNORA78-201ENST00000459373 127 ntBASIC20.72■□□□□ 0.91
USP39Q53GS9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.72■□□□□ 0.91
USP39Q53GS9 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.72■□□□□ 0.91
USP39Q53GS9 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.72■□□□□ 0.91
USP39Q53GS9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.72■□□□□ 0.91
USP39Q53GS9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
USP39Q53GS9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.72■□□□□ 0.91
USP39Q53GS9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.72■□□□□ 0.91
USP39Q53GS9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP39Q53GS9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.71■□□□□ 0.91
USP39Q53GS9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.71■□□□□ 0.91
USP39Q53GS9 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP39Q53GS9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
USP39Q53GS9 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.71■□□□□ 0.91
USP39Q53GS9 POM121L13P-201ENST00000422362 380 ntBASIC20.71■□□□□ 0.91
USP39Q53GS9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.71■□□□□ 0.91
USP39Q53GS9 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.71■□□□□ 0.91
USP39Q53GS9 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.71■□□□□ 0.91
USP39Q53GS9 REXO1L12P-201ENST00000622156 912 ntBASIC20.71■□□□□ 0.91
USP39Q53GS9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.71■□□□□ 0.91
USP39Q53GS9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP39Q53GS9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP39Q53GS9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP39Q53GS9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.71■□□□□ 0.91
USP39Q53GS9 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
USP39Q53GS9 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.71■□□□□ 0.91
USP39Q53GS9 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.7■□□□□ 0.9
USP39Q53GS9 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.7■□□□□ 0.9
USP39Q53GS9 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
USP39Q53GS9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
USP39Q53GS9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 ECEL1P3-201ENST00000427961 737 ntBASIC20.7■□□□□ 0.9
USP39Q53GS9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms