Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA1P55317 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA1P55317 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA1P55317 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
FOXA1P55317 AC007952.6-201ENST00000573168 2673 ntBASIC19.76■□□□□ 0.75
FOXA1P55317 AC003957.1-201ENST00000625108 2673 ntBASIC19.76■□□□□ 0.75
FOXA1P55317 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA1P55317 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA1P55317 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.76■□□□□ 0.75
FOXA1P55317 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.76■□□□□ 0.75
FOXA1P55317 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA1P55317 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.76■□□□□ 0.75
FOXA1P55317 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
FOXA1P55317 KRT18P61-201ENST00000585825 1298 ntBASIC19.76■□□□□ 0.75
FOXA1P55317 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.76■□□□□ 0.75
FOXA1P55317 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.75■□□□□ 0.75
FOXA1P55317 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
FOXA1P55317 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.75■□□□□ 0.75
FOXA1P55317 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.75■□□□□ 0.75
FOXA1P55317 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.75■□□□□ 0.75
FOXA1P55317 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
FOXA1P55317 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.75■□□□□ 0.75
FOXA1P55317 RBM17P2-201ENST00000616397 1405 ntBASIC19.75■□□□□ 0.75
FOXA1P55317 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA1P55317 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
FOXA1P55317 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.75■□□□□ 0.75
FOXA1P55317 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.75■□□□□ 0.75
FOXA1P55317 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.75■□□□□ 0.75
FOXA1P55317 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA1P55317 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.74■□□□□ 0.75
FOXA1P55317 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA1P55317 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA1P55317 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
FOXA1P55317 ZNRF2P3-201ENST00000424200 374 ntBASIC19.74■□□□□ 0.75
FOXA1P55317 KRT18P20-201ENST00000548986 1279 ntBASIC19.74■□□□□ 0.75
FOXA1P55317 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.74■□□□□ 0.75
FOXA1P55317 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.74■□□□□ 0.75
FOXA1P55317 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.74■□□□□ 0.75
FOXA1P55317 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.74■□□□□ 0.75
FOXA1P55317 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA1P55317 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA1P55317 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA1P55317 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA1P55317 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
FOXA1P55317 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.73■□□□□ 0.75
FOXA1P55317 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.73■□□□□ 0.75
FOXA1P55317 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.73■□□□□ 0.75
FOXA1P55317 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
FOXA1P55317 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
FOXA1P55317 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.73■□□□□ 0.75
FOXA1P55317 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
FOXA1P55317 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.73■□□□□ 0.75
FOXA1P55317 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
FOXA1P55317 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
FOXA1P55317 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA1P55317 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.72■□□□□ 0.75
FOXA1P55317 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.72■□□□□ 0.75
FOXA1P55317 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
FOXA1P55317 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
FOXA1P55317 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.72■□□□□ 0.75
FOXA1P55317 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.72■□□□□ 0.75
FOXA1P55317 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
FOXA1P55317 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
FOXA1P55317 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA1P55317 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms