Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
RFC3P40938 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RFC3P40938 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFC3P40938 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.68■□□□□ 0.58
RFC3P40938 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC3P40938 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC3P40938 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC3P40938 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFC3P40938 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC3P40938 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RFC3P40938 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC3P40938 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
RFC3P40938 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.68■□□□□ 0.58
RFC3P40938 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFC3P40938 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC3P40938 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC3P40938 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.68■□□□□ 0.58
RFC3P40938 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RFC3P40938 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC3P40938 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RFC3P40938 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RFC3P40938 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.67■□□□□ 0.58
RFC3P40938 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFC3P40938 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFC3P40938 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RFC3P40938 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.67■□□□□ 0.58
RFC3P40938 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.67■□□□□ 0.58
RFC3P40938 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFC3P40938 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFC3P40938 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.67■□□□□ 0.58
RFC3P40938 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.67■□□□□ 0.58
RFC3P40938 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RFC3P40938 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.67■□□□□ 0.58
RFC3P40938 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.67■□□□□ 0.58
RFC3P40938 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RFC3P40938 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
RFC3P40938 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFC3P40938 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RFC3P40938 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.66■□□□□ 0.58
RFC3P40938 UNC93B5-201ENST00000530315 699 ntBASIC18.66■□□□□ 0.58
RFC3P40938 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.66■□□□□ 0.58
RFC3P40938 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RFC3P40938 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFC3P40938 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.66■□□□□ 0.58
RFC3P40938 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.65■□□□□ 0.58
RFC3P40938 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RFC3P40938 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.65■□□□□ 0.58
RFC3P40938 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RFC3P40938 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.65■□□□□ 0.58
RFC3P40938 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.65■□□□□ 0.58
RFC3P40938 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RFC3P40938 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.65■□□□□ 0.58
RFC3P40938 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 AC105020.6-201ENST00000621523 1217 ntBASIC18.65■□□□□ 0.58
RFC3P40938 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RFC3P40938 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.65■□□□□ 0.58
RFC3P40938 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.65■□□□□ 0.58
RFC3P40938 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.65■□□□□ 0.58
RFC3P40938 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFC3P40938 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.64■□□□□ 0.58
RFC3P40938 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RFC3P40938 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.64■□□□□ 0.57
RFC3P40938 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
RFC3P40938 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RFC3P40938 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.64■□□□□ 0.57
RFC3P40938 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFC3P40938 AP003097.1-201ENST00000530657 1135 ntBASIC18.64■□□□□ 0.57
RFC3P40938 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RFC3P40938 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.64■□□□□ 0.57
RFC3P40938 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.64■□□□□ 0.57
RFC3P40938 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFC3P40938 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.64■□□□□ 0.57
RFC3P40938 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFC3P40938 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFC3P40938 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RFC3P40938 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RFC3P40938 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms