Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC27.17■■□□□ 1.94
COL3A1P02461 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC27.17■■□□□ 1.94
COL3A1P02461 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC27.17■■□□□ 1.94
COL3A1P02461 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL3A1P02461 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC27.17■■□□□ 1.94
COL3A1P02461 CRK-204ENST00000574295 1391 ntTSL 5 BASIC27.16■■□□□ 1.94
COL3A1P02461 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC27.16■■□□□ 1.94
COL3A1P02461 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL3A1P02461 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL3A1P02461 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL3A1P02461 HES2-205ENST00000487437 968 ntTSL 3 BASIC27.16■■□□□ 1.94
COL3A1P02461 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC27.16■■□□□ 1.94
COL3A1P02461 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC27.16■■□□□ 1.94
COL3A1P02461 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC27.16■■□□□ 1.94
COL3A1P02461 AC092368.3-202ENST00000574180 1591 ntBASIC27.16■■□□□ 1.94
COL3A1P02461 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL3A1P02461 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC27.15■■□□□ 1.94
COL3A1P02461 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 MFF-205ENST00000354503 1085 ntTSL 2 BASIC27.15■■□□□ 1.94
COL3A1P02461 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC27.15■■□□□ 1.94
COL3A1P02461 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC27.15■■□□□ 1.94
COL3A1P02461 AC098590.1-201ENST00000468126 897 ntBASIC27.15■■□□□ 1.94
COL3A1P02461 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC27.15■■□□□ 1.94
COL3A1P02461 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC27.15■■□□□ 1.94
COL3A1P02461 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC27.15■■□□□ 1.94
COL3A1P02461 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC27.15■■□□□ 1.94
COL3A1P02461 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC27.15■■□□□ 1.94
COL3A1P02461 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL3A1P02461 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC27.15■■□□□ 1.94
COL3A1P02461 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC27.15■■□□□ 1.94
COL3A1P02461 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.94
COL3A1P02461 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
COL3A1P02461 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
COL3A1P02461 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
COL3A1P02461 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.94
COL3A1P02461 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC27.14■■□□□ 1.94
COL3A1P02461 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.94
COL3A1P02461 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
COL3A1P02461 NXN-202ENST00000537628 1340 ntTSL 3 BASIC27.14■■□□□ 1.94
COL3A1P02461 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
COL3A1P02461 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
COL3A1P02461 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
COL3A1P02461 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
COL3A1P02461 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.93
COL3A1P02461 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
COL3A1P02461 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC27.14■■□□□ 1.93
COL3A1P02461 ITM2C-210ENST00000620962 501 ntBASIC27.13■■□□□ 1.93
COL3A1P02461 BID-203ENST00000399765 1879 ntTSL 2 BASIC27.13■■□□□ 1.93
COL3A1P02461 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
COL3A1P02461 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL3A1P02461 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL3A1P02461 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL3A1P02461 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC27.13■■□□□ 1.93
COL3A1P02461 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL3A1P02461 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL3A1P02461 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC27.13■■□□□ 1.93
COL3A1P02461 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL3A1P02461 STK25-205ENST00000405883 1904 ntTSL 2 BASIC27.13■■□□□ 1.93
COL3A1P02461 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC27.13■■□□□ 1.93
COL3A1P02461 AC026366.1-201ENST00000488803 879 ntBASIC27.13■■□□□ 1.93
COL3A1P02461 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC27.13■■□□□ 1.93
COL3A1P02461 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC27.13■■□□□ 1.93
COL3A1P02461 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL3A1P02461 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC27.12■■□□□ 1.93
COL3A1P02461 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
COL3A1P02461 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC27.12■■□□□ 1.93
COL3A1P02461 PRORSD1P-201ENST00000295112 541 ntBASIC27.12■■□□□ 1.93
COL3A1P02461 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL3A1P02461 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL3A1P02461 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC27.12■■□□□ 1.93
COL3A1P02461 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
COL3A1P02461 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL3A1P02461 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
COL3A1P02461 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC27.12■■□□□ 1.93
COL3A1P02461 SOX15-203ENST00000570788 1093 ntBASIC27.12■■□□□ 1.93
COL3A1P02461 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC27.12■■□□□ 1.93
COL3A1P02461 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC27.12■■□□□ 1.93
COL3A1P02461 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL3A1P02461 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC27.12■■□□□ 1.93
COL3A1P02461 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL3A1P02461 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC27.11■■□□□ 1.93
COL3A1P02461 MMAB-206ENST00000540016 945 ntTSL 3 BASIC27.11■■□□□ 1.93
COL3A1P02461 AC233263.1-201ENST00000578059 224 ntBASIC27.11■■□□□ 1.93
COL3A1P02461 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC27.11■■□□□ 1.93
COL3A1P02461 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL3A1P02461 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL3A1P02461 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC27.1■■□□□ 1.93
COL3A1P02461 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC27.1■■□□□ 1.93
COL3A1P02461 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
COL3A1P02461 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL3A1P02461 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms