Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PDGFBP01127 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDGFBP01127 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDGFBP01127 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDGFBP01127 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.72■□□□□ 0.91
PDGFBP01127 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.72■□□□□ 0.91
PDGFBP01127 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.72■□□□□ 0.91
PDGFBP01127 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.72■□□□□ 0.91
PDGFBP01127 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDGFBP01127 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.72■□□□□ 0.91
PDGFBP01127 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.72■□□□□ 0.91
PDGFBP01127 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.72■□□□□ 0.91
PDGFBP01127 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.72■□□□□ 0.91
PDGFBP01127 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
PDGFBP01127 AC006011.2-201ENST00000621313 1158 ntBASIC20.72■□□□□ 0.91
PDGFBP01127 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PDGFBP01127 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.72■□□□□ 0.91
PDGFBP01127 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
PDGFBP01127 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDGFBP01127 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.71■□□□□ 0.91
PDGFBP01127 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDGFBP01127 NBPF21P-201ENST00000425093 1451 ntBASIC20.71■□□□□ 0.91
PDGFBP01127 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PDGFBP01127 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDGFBP01127 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDGFBP01127 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PDGFBP01127 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDGFBP01127 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PDGFBP01127 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.71■□□□□ 0.91
PDGFBP01127 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.91
PDGFBP01127 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDGFBP01127 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.7■□□□□ 0.9
PDGFBP01127 AC124283.5-201ENST00000624661 1809 ntBASIC20.7■□□□□ 0.9
PDGFBP01127 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.7■□□□□ 0.9
PDGFBP01127 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDGFBP01127 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDGFBP01127 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.7■□□□□ 0.9
PDGFBP01127 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
PDGFBP01127 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.7■□□□□ 0.9
PDGFBP01127 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.7■□□□□ 0.9
PDGFBP01127 FITM1-202ENST00000559294 800 ntBASIC20.7■□□□□ 0.9
PDGFBP01127 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.7■□□□□ 0.9
PDGFBP01127 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDGFBP01127 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.7■□□□□ 0.9
PDGFBP01127 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.7■□□□□ 0.9
PDGFBP01127 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.7■□□□□ 0.9
PDGFBP01127 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.7■□□□□ 0.9
PDGFBP01127 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDGFBP01127 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.69■□□□□ 0.9
PDGFBP01127 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.69■□□□□ 0.9
PDGFBP01127 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFBP01127 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.69■□□□□ 0.9
PDGFBP01127 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFBP01127 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PDGFBP01127 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.69■□□□□ 0.9
PDGFBP01127 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.69■□□□□ 0.9
PDGFBP01127 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.69■□□□□ 0.9
PDGFBP01127 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFBP01127 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFBP01127 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PDGFBP01127 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
PDGFBP01127 AL358472.4-201ENST00000633140 710 ntBASIC20.69■□□□□ 0.9
PDGFBP01127 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.69■□□□□ 0.9
PDGFBP01127 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.69■□□□□ 0.9
PDGFBP01127 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
PDGFBP01127 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFBP01127 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFBP01127 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFBP01127 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFBP01127 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
PDGFBP01127 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.68■□□□□ 0.9
PDGFBP01127 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFBP01127 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFBP01127 AL121829.2-201ENST00000620908 328 ntBASIC20.68■□□□□ 0.9
PDGFBP01127 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFBP01127 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFBP01127 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
PDGFBP01127 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFBP01127 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.67■□□□□ 0.9
PDGFBP01127 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.67■□□□□ 0.9
PDGFBP01127 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PDGFBP01127 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.67■□□□□ 0.9
PDGFBP01127 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PDGFBP01127 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.67■□□□□ 0.9
PDGFBP01127 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.67■□□□□ 0.9
PDGFBP01127 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.67■□□□□ 0.9
PDGFBP01127 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.67■□□□□ 0.9
PDGFBP01127 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFBP01127 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFBP01127 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFBP01127 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms