Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
ABCA1O95477 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ABCA1O95477 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
ABCA1O95477 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
ABCA1O95477 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.08■□□□□ 0.33
ABCA1O95477 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.08■□□□□ 0.33
ABCA1O95477 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
ABCA1O95477 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
ABCA1O95477 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.08■□□□□ 0.33
ABCA1O95477 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.08■□□□□ 0.33
ABCA1O95477 AL355075.4-201ENST00000554988 638 ntBASIC17.08■□□□□ 0.33
ABCA1O95477 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.08■□□□□ 0.33
ABCA1O95477 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
ABCA1O95477 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
ABCA1O95477 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.08■□□□□ 0.33
ABCA1O95477 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.08■□□□□ 0.33
ABCA1O95477 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
ABCA1O95477 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA1O95477 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA1O95477 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA1O95477 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA1O95477 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
ABCA1O95477 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
ABCA1O95477 AC026471.6-201ENST00000622954 1905 ntBASIC17.08■□□□□ 0.32
ABCA1O95477 FBXW4P1-201ENST00000426721 2239 ntBASIC17.08■□□□□ 0.32
ABCA1O95477 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA1O95477 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA1O95477 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.08■□□□□ 0.32
ABCA1O95477 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA1O95477 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.08■□□□□ 0.32
ABCA1O95477 AC133681.1-201ENST00000465482 601 ntBASIC17.08■□□□□ 0.32
ABCA1O95477 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.08■□□□□ 0.32
ABCA1O95477 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA1O95477 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA1O95477 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
ABCA1O95477 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
ABCA1O95477 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.07■□□□□ 0.32
ABCA1O95477 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ABCA1O95477 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.07■□□□□ 0.32
ABCA1O95477 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.07■□□□□ 0.32
ABCA1O95477 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.07■□□□□ 0.32
ABCA1O95477 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.07■□□□□ 0.32
ABCA1O95477 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
ABCA1O95477 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.07■□□□□ 0.32
ABCA1O95477 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.07■□□□□ 0.32
ABCA1O95477 RN7SL471P-201ENST00000580476 299 ntBASIC17.07■□□□□ 0.32
ABCA1O95477 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
ABCA1O95477 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA1O95477 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.06■□□□□ 0.32
ABCA1O95477 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
ABCA1O95477 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
ABCA1O95477 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 AC010542.4-201ENST00000563151 1910 ntBASIC17.06■□□□□ 0.32
ABCA1O95477 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.06■□□□□ 0.32
ABCA1O95477 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.06■□□□□ 0.32
ABCA1O95477 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.06■□□□□ 0.32
ABCA1O95477 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
ABCA1O95477 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
ABCA1O95477 AL445228.2-201ENST00000605589 952 ntBASIC17.06■□□□□ 0.32
ABCA1O95477 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
ABCA1O95477 AC242852.2-201ENST00000615738 1807 ntBASIC17.06■□□□□ 0.32
ABCA1O95477 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.06■□□□□ 0.32
ABCA1O95477 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
ABCA1O95477 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA1O95477 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ABCA1O95477 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
ABCA1O95477 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.05■□□□□ 0.32
ABCA1O95477 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA1O95477 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
ABCA1O95477 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.05■□□□□ 0.32
ABCA1O95477 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA1O95477 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
ABCA1O95477 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.05■□□□□ 0.32
ABCA1O95477 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms