Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.94
Trim9Q8C7M3 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Trim9Q8C7M3 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC27.13■■□□□ 1.93
Trim9Q8C7M3 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
Trim9Q8C7M3 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Trim9Q8C7M3 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Trim9Q8C7M3 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC27.11■■□□□ 1.93
Trim9Q8C7M3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC27.11■■□□□ 1.93
Trim9Q8C7M3 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Trim9Q8C7M3 Fezf2-202ENSMUST00000224023 1917 ntBASIC27.1■■□□□ 1.93
Trim9Q8C7M3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Trim9Q8C7M3 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Trim9Q8C7M3 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Trim9Q8C7M3 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC27.08■■□□□ 1.93
Trim9Q8C7M3 Gm24970-201ENSMUST00000175582 82 ntBASIC27.08■■□□□ 1.93
Trim9Q8C7M3 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC27.07■■□□□ 1.92
Trim9Q8C7M3 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Trim9Q8C7M3 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Trim9Q8C7M3 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC27.06■■□□□ 1.92
Trim9Q8C7M3 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
Trim9Q8C7M3 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Trim9Q8C7M3 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC27.04■■□□□ 1.92
Trim9Q8C7M3 AC157572.2-201ENSMUST00000226970 908 ntBASIC27.04■■□□□ 1.92
Trim9Q8C7M3 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Trim9Q8C7M3 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC27.03■■□□□ 1.92
Trim9Q8C7M3 Pcf11-205ENSMUST00000208255 1720 ntBASIC27.03■■□□□ 1.92
Trim9Q8C7M3 Gm45855-201ENSMUST00000212546 880 ntBASIC27.02■■□□□ 1.92
Trim9Q8C7M3 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Trim9Q8C7M3 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Trim9Q8C7M3 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Trim9Q8C7M3 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
Trim9Q8C7M3 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Trim9Q8C7M3 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Trim9Q8C7M3 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Trim9Q8C7M3 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Trim9Q8C7M3 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Trim9Q8C7M3 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Trim9Q8C7M3 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Trim9Q8C7M3 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.91
Trim9Q8C7M3 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Trim9Q8C7M3 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Trim9Q8C7M3 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.93■■□□□ 1.9
Trim9Q8C7M3 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Trim9Q8C7M3 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Trim9Q8C7M3 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
Trim9Q8C7M3 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Trim9Q8C7M3 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
Trim9Q8C7M3 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Trim9Q8C7M3 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Trim9Q8C7M3 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Trim9Q8C7M3 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.88■■□□□ 1.89
Trim9Q8C7M3 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Trim9Q8C7M3 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Trim9Q8C7M3 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
Trim9Q8C7M3 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Trim9Q8C7M3 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC26.86■■□□□ 1.89
Trim9Q8C7M3 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Trim9Q8C7M3 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Trim9Q8C7M3 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC26.85■■□□□ 1.89
Trim9Q8C7M3 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Trim9Q8C7M3 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.84■■□□□ 1.89
Trim9Q8C7M3 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Trim9Q8C7M3 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC26.83■■□□□ 1.89
Trim9Q8C7M3 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
Trim9Q8C7M3 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Trim9Q8C7M3 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
Trim9Q8C7M3 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Trim9Q8C7M3 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
Trim9Q8C7M3 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Trim9Q8C7M3 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Trim9Q8C7M3 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Trim9Q8C7M3 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Trim9Q8C7M3 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Trim9Q8C7M3 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Trim9Q8C7M3 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Trim9Q8C7M3 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Trim9Q8C7M3 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Trim9Q8C7M3 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC26.73■■□□□ 1.87
Trim9Q8C7M3 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Trim9Q8C7M3 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC26.73■■□□□ 1.87
Trim9Q8C7M3 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Trim9Q8C7M3 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Trim9Q8C7M3 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Trim9Q8C7M3 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim9Q8C7M3 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim9Q8C7M3 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
Trim9Q8C7M3 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
Trim9Q8C7M3 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Trim9Q8C7M3 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.66■■□□□ 1.86
Trim9Q8C7M3 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim9Q8C7M3 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim9Q8C7M3 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim9Q8C7M3 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC26.64■■□□□ 1.86
Trim9Q8C7M3 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Trim9Q8C7M3 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC26.62■■□□□ 1.85
Trim9Q8C7M3 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
Trim9Q8C7M3 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim9Q8C7M3 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
Trim9Q8C7M3 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim9Q8C7M3 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms