Protein–RNA interactions for Protein: Q8C4J0

Ccdc60, Coiled-coil domain-containing protein 60, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc60Q8C4J0 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
Ccdc60Q8C4J0 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Ccdc60Q8C4J0 Amer2-203ENSMUST00000225247 2662 ntBASIC31.36■■■□□ 2.61
Ccdc60Q8C4J0 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc60Q8C4J0 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc60Q8C4J0 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ccdc60Q8C4J0 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC31.34■■■□□ 2.61
Ccdc60Q8C4J0 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ccdc60Q8C4J0 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ccdc60Q8C4J0 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
Ccdc60Q8C4J0 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Ccdc60Q8C4J0 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Ccdc60Q8C4J0 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ccdc60Q8C4J0 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ccdc60Q8C4J0 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC31.31■■■□□ 2.6
Ccdc60Q8C4J0 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ccdc60Q8C4J0 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ccdc60Q8C4J0 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC31.29■■■□□ 2.6
Ccdc60Q8C4J0 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc60Q8C4J0 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC31.29■■■□□ 2.6
Ccdc60Q8C4J0 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc60Q8C4J0 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc60Q8C4J0 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc60Q8C4J0 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc60Q8C4J0 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
Ccdc60Q8C4J0 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Ccdc60Q8C4J0 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Ccdc60Q8C4J0 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC31.22■■■□□ 2.59
Ccdc60Q8C4J0 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
Ccdc60Q8C4J0 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC31.22■■■□□ 2.59
Ccdc60Q8C4J0 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Ccdc60Q8C4J0 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ccdc60Q8C4J0 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ccdc60Q8C4J0 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Ccdc60Q8C4J0 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Ccdc60Q8C4J0 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
Ccdc60Q8C4J0 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Ccdc60Q8C4J0 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Ccdc60Q8C4J0 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC31.16■■■□□ 2.58
Ccdc60Q8C4J0 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Ccdc60Q8C4J0 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC31.14■■■□□ 2.58
Ccdc60Q8C4J0 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC31.14■■■□□ 2.58
Ccdc60Q8C4J0 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC31.14■■■□□ 2.58
Ccdc60Q8C4J0 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Ccdc60Q8C4J0 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Ccdc60Q8C4J0 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Ccdc60Q8C4J0 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
Ccdc60Q8C4J0 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
Ccdc60Q8C4J0 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Ccdc60Q8C4J0 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC31.11■■■□□ 2.57
Ccdc60Q8C4J0 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Ccdc60Q8C4J0 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
Ccdc60Q8C4J0 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
Ccdc60Q8C4J0 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
Ccdc60Q8C4J0 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Ccdc60Q8C4J0 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC31.07■■■□□ 2.56
Ccdc60Q8C4J0 Pcf11-205ENSMUST00000208255 1720 ntBASIC31.07■■■□□ 2.56
Ccdc60Q8C4J0 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Ccdc60Q8C4J0 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC31.06■■■□□ 2.56
Ccdc60Q8C4J0 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
Ccdc60Q8C4J0 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Ccdc60Q8C4J0 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Ccdc60Q8C4J0 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC31.01■■■□□ 2.55
Ccdc60Q8C4J0 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Ccdc60Q8C4J0 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Ccdc60Q8C4J0 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Ccdc60Q8C4J0 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC30.99■■■□□ 2.55
Ccdc60Q8C4J0 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc60Q8C4J0 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc60Q8C4J0 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc60Q8C4J0 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC30.97■■■□□ 2.55
Ccdc60Q8C4J0 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC30.96■■■□□ 2.55
Ccdc60Q8C4J0 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
Ccdc60Q8C4J0 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc60Q8C4J0 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc60Q8C4J0 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Ccdc60Q8C4J0 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Ccdc60Q8C4J0 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Ccdc60Q8C4J0 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Ccdc60Q8C4J0 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC30.89■■■□□ 2.54
Ccdc60Q8C4J0 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
Ccdc60Q8C4J0 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Ccdc60Q8C4J0 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Ccdc60Q8C4J0 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
Ccdc60Q8C4J0 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
Ccdc60Q8C4J0 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Ccdc60Q8C4J0 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ccdc60Q8C4J0 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC30.83■■■□□ 2.53
Ccdc60Q8C4J0 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
Ccdc60Q8C4J0 Gm9939-201ENSMUST00000067161 1154 ntBASIC30.81■■■□□ 2.52
Ccdc60Q8C4J0 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
Ccdc60Q8C4J0 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Ccdc60Q8C4J0 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC30.8■■■□□ 2.52
Ccdc60Q8C4J0 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Ccdc60Q8C4J0 Gm42809-201ENSMUST00000198429 1138 ntBASIC30.78■■■□□ 2.52
Ccdc60Q8C4J0 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Ccdc60Q8C4J0 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.52
Ccdc60Q8C4J0 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Ccdc60Q8C4J0 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC30.75■■■□□ 2.51
Ccdc60Q8C4J0 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC30.75■■■□□ 2.51
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms