Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm42809-201ENSMUST00000198429 1138 ntBASIC35.22■■■■□ 3.23
Usp47Q8BY87 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC35.21■■■■□ 3.23
Usp47Q8BY87 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC35.2■■■■□ 3.23
Usp47Q8BY87 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC35.2■■■■□ 3.23
Usp47Q8BY87 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
Usp47Q8BY87 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC35.19■■■■□ 3.22
Usp47Q8BY87 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC35.18■■■■□ 3.22
Usp47Q8BY87 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC35.18■■■■□ 3.22
Usp47Q8BY87 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC35.16■■■■□ 3.22
Usp47Q8BY87 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
Usp47Q8BY87 Gm8503-201ENSMUST00000118131 455 ntBASIC35.16■■■■□ 3.22
Usp47Q8BY87 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
Usp47Q8BY87 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
Usp47Q8BY87 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
Usp47Q8BY87 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC35.15■■■■□ 3.22
Usp47Q8BY87 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
Usp47Q8BY87 Gm6821-201ENSMUST00000107540 542 ntBASIC35.14■■■■□ 3.22
Usp47Q8BY87 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
Usp47Q8BY87 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC35.14■■■■□ 3.22
Usp47Q8BY87 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
Usp47Q8BY87 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC35.13■■■■□ 3.21
Usp47Q8BY87 Gm43445-201ENSMUST00000198564 2091 ntBASIC35.11■■■■□ 3.21
Usp47Q8BY87 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC35.11■■■■□ 3.21
Usp47Q8BY87 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
Usp47Q8BY87 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC35.1■■■■□ 3.21
Usp47Q8BY87 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
Usp47Q8BY87 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC35.09■■■■□ 3.21
Usp47Q8BY87 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC35.07■■■■□ 3.21
Usp47Q8BY87 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC35.07■■■■□ 3.2
Usp47Q8BY87 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
Usp47Q8BY87 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
Usp47Q8BY87 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
Usp47Q8BY87 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
Usp47Q8BY87 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
Usp47Q8BY87 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC35.03■■■■□ 3.2
Usp47Q8BY87 Nkain2-201ENSMUST00000092602 558 ntBASIC35.03■■■■□ 3.2
Usp47Q8BY87 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
Usp47Q8BY87 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
Usp47Q8BY87 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC35.01■■■■□ 3.2
Usp47Q8BY87 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
Usp47Q8BY87 Gm6206-201ENSMUST00000133472 2199 ntBASIC35.01■■■■□ 3.19
Usp47Q8BY87 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC35■■■■□ 3.19
Usp47Q8BY87 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
Usp47Q8BY87 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC34.99■■■■□ 3.19
Usp47Q8BY87 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
Usp47Q8BY87 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
Usp47Q8BY87 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
Usp47Q8BY87 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC34.96■■■■□ 3.19
Usp47Q8BY87 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC34.96■■■■□ 3.19
Usp47Q8BY87 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
Usp47Q8BY87 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC34.95■■■■□ 3.19
Usp47Q8BY87 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC34.95■■■■□ 3.19
Usp47Q8BY87 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC34.94■■■■□ 3.18
Usp47Q8BY87 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC34.94■■■■□ 3.18
Usp47Q8BY87 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
Usp47Q8BY87 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC34.94■■■■□ 3.18
Usp47Q8BY87 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC34.94■■■■□ 3.18
Usp47Q8BY87 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC34.93■■■■□ 3.18
Usp47Q8BY87 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC34.92■■■■□ 3.18
Usp47Q8BY87 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC34.92■■■■□ 3.18
Usp47Q8BY87 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC34.91■■■■□ 3.18
Usp47Q8BY87 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC34.9■■■■□ 3.18
Usp47Q8BY87 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
Usp47Q8BY87 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Usp47Q8BY87 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
Usp47Q8BY87 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Usp47Q8BY87 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC34.88■■■■□ 3.17
Usp47Q8BY87 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
Usp47Q8BY87 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
Usp47Q8BY87 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
Usp47Q8BY87 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
Usp47Q8BY87 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
Usp47Q8BY87 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC34.85■■■■□ 3.17
Usp47Q8BY87 Gm9905-201ENSMUST00000065740 1845 ntBASIC34.85■■■■□ 3.17
Usp47Q8BY87 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
Usp47Q8BY87 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
Usp47Q8BY87 Pcf11-205ENSMUST00000208255 1720 ntBASIC34.84■■■■□ 3.17
Usp47Q8BY87 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
Usp47Q8BY87 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC34.84■■■■□ 3.17
Usp47Q8BY87 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
Usp47Q8BY87 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
Usp47Q8BY87 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
Usp47Q8BY87 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC34.81■■■■□ 3.16
Usp47Q8BY87 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC34.78■■■■□ 3.16
Usp47Q8BY87 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC34.77■■■■□ 3.16
Usp47Q8BY87 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC34.77■■■■□ 3.16
Usp47Q8BY87 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
Usp47Q8BY87 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC34.74■■■■□ 3.15
Usp47Q8BY87 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
Usp47Q8BY87 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
Usp47Q8BY87 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
Usp47Q8BY87 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC34.74■■■■□ 3.15
Usp47Q8BY87 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC34.71■■■■□ 3.15
Usp47Q8BY87 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC34.7■■■■□ 3.15
Usp47Q8BY87 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
Usp47Q8BY87 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC34.69■■■■□ 3.14
Usp47Q8BY87 Gm30023-201ENSMUST00000197970 889 ntBASIC34.69■■■■□ 3.14
Usp47Q8BY87 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
Usp47Q8BY87 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC34.68■■■■□ 3.14
Usp47Q8BY87 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms