Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Npc1l1Q6T3U4 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC29.69■■■□□ 2.34
Npc1l1Q6T3U4 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC29.69■■■□□ 2.34
Npc1l1Q6T3U4 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC29.68■■■□□ 2.34
Npc1l1Q6T3U4 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC29.68■■■□□ 2.34
Npc1l1Q6T3U4 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
Npc1l1Q6T3U4 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Npc1l1Q6T3U4 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Npc1l1Q6T3U4 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Npc1l1Q6T3U4 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Npc1l1Q6T3U4 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Npc1l1Q6T3U4 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Npc1l1Q6T3U4 Gm43445-201ENSMUST00000198564 2091 ntBASIC29.63■■■□□ 2.33
Npc1l1Q6T3U4 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC29.62■■■□□ 2.33
Npc1l1Q6T3U4 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC29.62■■■□□ 2.33
Npc1l1Q6T3U4 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
Npc1l1Q6T3U4 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC29.59■■■□□ 2.33
Npc1l1Q6T3U4 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
Npc1l1Q6T3U4 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
Npc1l1Q6T3U4 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC29.57■■■□□ 2.32
Npc1l1Q6T3U4 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC29.56■■■□□ 2.32
Npc1l1Q6T3U4 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Npc1l1Q6T3U4 Gm9905-201ENSMUST00000065740 1845 ntBASIC29.55■■■□□ 2.32
Npc1l1Q6T3U4 Gm6206-201ENSMUST00000133472 2199 ntBASIC29.55■■■□□ 2.32
Npc1l1Q6T3U4 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Npc1l1Q6T3U4 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
Npc1l1Q6T3U4 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC29.54■■■□□ 2.32
Npc1l1Q6T3U4 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Npc1l1Q6T3U4 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
Npc1l1Q6T3U4 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
Npc1l1Q6T3U4 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
Npc1l1Q6T3U4 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.32
Npc1l1Q6T3U4 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
Npc1l1Q6T3U4 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
Npc1l1Q6T3U4 Nkain2-201ENSMUST00000092602 558 ntBASIC29.51■■■□□ 2.32
Npc1l1Q6T3U4 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
Npc1l1Q6T3U4 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
Npc1l1Q6T3U4 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Npc1l1Q6T3U4 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC29.49■■■□□ 2.31
Npc1l1Q6T3U4 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
Npc1l1Q6T3U4 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC29.48■■■□□ 2.31
Npc1l1Q6T3U4 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC29.47■■■□□ 2.31
Npc1l1Q6T3U4 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC29.47■■■□□ 2.31
Npc1l1Q6T3U4 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Npc1l1Q6T3U4 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC29.47■■■□□ 2.31
Npc1l1Q6T3U4 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Npc1l1Q6T3U4 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
Npc1l1Q6T3U4 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Npc1l1Q6T3U4 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC29.45■■■□□ 2.3
Npc1l1Q6T3U4 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.3
Npc1l1Q6T3U4 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
Npc1l1Q6T3U4 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC29.44■■■□□ 2.3
Npc1l1Q6T3U4 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC29.44■■■□□ 2.3
Npc1l1Q6T3U4 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Npc1l1Q6T3U4 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Npc1l1Q6T3U4 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Npc1l1Q6T3U4 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Npc1l1Q6T3U4 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Npc1l1Q6T3U4 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Npc1l1Q6T3U4 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Npc1l1Q6T3U4 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Npc1l1Q6T3U4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Npc1l1Q6T3U4 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Npc1l1Q6T3U4 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Npc1l1Q6T3U4 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Npc1l1Q6T3U4 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Npc1l1Q6T3U4 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Npc1l1Q6T3U4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Npc1l1Q6T3U4 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC29.37■■■□□ 2.29
Npc1l1Q6T3U4 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC29.37■■■□□ 2.29
Npc1l1Q6T3U4 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
Npc1l1Q6T3U4 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
Npc1l1Q6T3U4 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Npc1l1Q6T3U4 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC29.36■■■□□ 2.29
Npc1l1Q6T3U4 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Npc1l1Q6T3U4 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
Npc1l1Q6T3U4 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Npc1l1Q6T3U4 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
Npc1l1Q6T3U4 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Npc1l1Q6T3U4 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Npc1l1Q6T3U4 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC29.31■■■□□ 2.28
Npc1l1Q6T3U4 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC29.31■■■□□ 2.28
Npc1l1Q6T3U4 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Npc1l1Q6T3U4 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
Npc1l1Q6T3U4 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Npc1l1Q6T3U4 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC29.3■■■□□ 2.28
Npc1l1Q6T3U4 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
Npc1l1Q6T3U4 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
Npc1l1Q6T3U4 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
Npc1l1Q6T3U4 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Npc1l1Q6T3U4 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Npc1l1Q6T3U4 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Npc1l1Q6T3U4 Gm7432-201ENSMUST00000210343 879 ntBASIC29.25■■■□□ 2.27
Npc1l1Q6T3U4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Npc1l1Q6T3U4 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Npc1l1Q6T3U4 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC29.23■■■□□ 2.27
Npc1l1Q6T3U4 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Npc1l1Q6T3U4 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC29.21■■■□□ 2.27
Npc1l1Q6T3U4 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
Npc1l1Q6T3U4 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC29.2■■■□□ 2.27
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms