Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Slc6a1P31648 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Slc6a1P31648 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
Slc6a1P31648 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Slc6a1P31648 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Slc6a1P31648 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC20.69■□□□□ 0.9
Slc6a1P31648 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Slc6a1P31648 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Slc6a1P31648 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Slc6a1P31648 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Slc6a1P31648 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Slc6a1P31648 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Slc6a1P31648 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Slc6a1P31648 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Slc6a1P31648 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Slc6a1P31648 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Slc6a1P31648 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Slc6a1P31648 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Slc6a1P31648 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Slc6a1P31648 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Slc6a1P31648 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Slc6a1P31648 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Slc6a1P31648 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Slc6a1P31648 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Slc6a1P31648 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Slc6a1P31648 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Slc6a1P31648 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Slc6a1P31648 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Slc6a1P31648 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Slc6a1P31648 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Slc6a1P31648 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Slc6a1P31648 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Slc6a1P31648 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Slc6a1P31648 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Slc6a1P31648 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Slc6a1P31648 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Slc6a1P31648 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Slc6a1P31648 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Slc6a1P31648 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC20.6■□□□□ 0.89
Slc6a1P31648 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Slc6a1P31648 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Slc6a1P31648 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Slc6a1P31648 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Slc6a1P31648 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Slc6a1P31648 Gm30346-201ENSMUST00000218641 1699 ntBASIC20.58■□□□□ 0.89
Slc6a1P31648 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Slc6a1P31648 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Slc6a1P31648 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Slc6a1P31648 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Slc6a1P31648 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Slc6a1P31648 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Slc6a1P31648 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Slc6a1P31648 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Slc6a1P31648 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Slc6a1P31648 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.55■□□□□ 0.88
Slc6a1P31648 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Slc6a1P31648 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Slc6a1P31648 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.54■□□□□ 0.88
Slc6a1P31648 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC20.54■□□□□ 0.88
Slc6a1P31648 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Slc6a1P31648 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.53■□□□□ 0.88
Slc6a1P31648 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.53■□□□□ 0.88
Slc6a1P31648 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Slc6a1P31648 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
Slc6a1P31648 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Slc6a1P31648 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Slc6a1P31648 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Slc6a1P31648 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Slc6a1P31648 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Slc6a1P31648 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Slc6a1P31648 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Slc6a1P31648 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Slc6a1P31648 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
Slc6a1P31648 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Slc6a1P31648 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
Slc6a1P31648 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Slc6a1P31648 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.47■□□□□ 0.87
Slc6a1P31648 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC20.46■□□□□ 0.87
Slc6a1P31648 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Slc6a1P31648 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
Slc6a1P31648 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Slc6a1P31648 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Slc6a1P31648 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Slc6a1P31648 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Slc6a1P31648 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.45■□□□□ 0.86
Slc6a1P31648 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Slc6a1P31648 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Slc6a1P31648 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Slc6a1P31648 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Slc6a1P31648 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Slc6a1P31648 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Slc6a1P31648 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Slc6a1P31648 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Slc6a1P31648 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Slc6a1P31648 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC20.42■□□□□ 0.86
Slc6a1P31648 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Slc6a1P31648 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Slc6a1P31648 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Slc6a1P31648 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Slc6a1P31648 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 8.1 ms