Protein–RNA interactions for Protein: P25318

Col8a2, Collagen alpha-2(VIII) chain, mousemouse

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a2P25318 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col8a2P25318 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
Col8a2P25318 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Col8a2P25318 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC20.58■□□□□ 0.88
Col8a2P25318 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.58■□□□□ 0.88
Col8a2P25318 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col8a2P25318 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Col8a2P25318 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col8a2P25318 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col8a2P25318 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col8a2P25318 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col8a2P25318 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col8a2P25318 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col8a2P25318 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col8a2P25318 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col8a2P25318 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Col8a2P25318 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col8a2P25318 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Col8a2P25318 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col8a2P25318 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col8a2P25318 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col8a2P25318 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col8a2P25318 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col8a2P25318 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.52■□□□□ 0.88
Col8a2P25318 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Col8a2P25318 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col8a2P25318 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col8a2P25318 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col8a2P25318 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Col8a2P25318 Gm6821-201ENSMUST00000107540 542 ntBASIC20.49■□□□□ 0.87
Col8a2P25318 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC20.49■□□□□ 0.87
Col8a2P25318 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col8a2P25318 Amer2-203ENSMUST00000225247 2662 ntBASIC20.49■□□□□ 0.87
Col8a2P25318 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col8a2P25318 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col8a2P25318 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col8a2P25318 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC20.47■□□□□ 0.87
Col8a2P25318 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.47■□□□□ 0.87
Col8a2P25318 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col8a2P25318 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col8a2P25318 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col8a2P25318 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.45■□□□□ 0.86
Col8a2P25318 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col8a2P25318 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col8a2P25318 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col8a2P25318 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col8a2P25318 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col8a2P25318 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.41■□□□□ 0.86
Col8a2P25318 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col8a2P25318 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col8a2P25318 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.41■□□□□ 0.86
Col8a2P25318 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
Col8a2P25318 Gm8503-201ENSMUST00000118131 455 ntBASIC20.4■□□□□ 0.86
Col8a2P25318 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col8a2P25318 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col8a2P25318 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col8a2P25318 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col8a2P25318 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col8a2P25318 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col8a2P25318 Nkain2-201ENSMUST00000092602 558 ntBASIC20.38■□□□□ 0.85
Col8a2P25318 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col8a2P25318 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Col8a2P25318 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
Col8a2P25318 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col8a2P25318 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col8a2P25318 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC20.35■□□□□ 0.85
Col8a2P25318 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.35■□□□□ 0.85
Col8a2P25318 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col8a2P25318 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.34■□□□□ 0.85
Col8a2P25318 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col8a2P25318 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Col8a2P25318 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col8a2P25318 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
Col8a2P25318 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col8a2P25318 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.31■□□□□ 0.84
Col8a2P25318 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col8a2P25318 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col8a2P25318 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.31■□□□□ 0.84
Col8a2P25318 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col8a2P25318 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col8a2P25318 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.3■□□□□ 0.84
Col8a2P25318 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col8a2P25318 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Col8a2P25318 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC20.29■□□□□ 0.84
Col8a2P25318 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
Col8a2P25318 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col8a2P25318 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col8a2P25318 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.28■□□□□ 0.84
Col8a2P25318 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Col8a2P25318 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col8a2P25318 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC20.27■□□□□ 0.84
Col8a2P25318 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.26■□□□□ 0.83
Col8a2P25318 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Col8a2P25318 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Col8a2P25318 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col8a2P25318 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col8a2P25318 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col8a2P25318 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col8a2P25318 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col8a2P25318 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms