Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Sdc1P18828 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sdc1P18828 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc1P18828 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc1P18828 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Sdc1P18828 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC19.87■□□□□ 0.77
Sdc1P18828 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC19.87■□□□□ 0.77
Sdc1P18828 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Sdc1P18828 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC19.86■□□□□ 0.77
Sdc1P18828 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc1P18828 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc1P18828 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sdc1P18828 Gm30346-201ENSMUST00000218641 1699 ntBASIC19.85■□□□□ 0.77
Sdc1P18828 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sdc1P18828 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sdc1P18828 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc1P18828 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc1P18828 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Sdc1P18828 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc1P18828 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc1P18828 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc1P18828 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc1P18828 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc1P18828 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sdc1P18828 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sdc1P18828 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sdc1P18828 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.8■□□□□ 0.76
Sdc1P18828 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Sdc1P18828 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Sdc1P18828 Rab21-202ENSMUST00000218831 843 ntBASIC19.8■□□□□ 0.76
Sdc1P18828 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Sdc1P18828 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Sdc1P18828 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sdc1P18828 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sdc1P18828 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sdc1P18828 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sdc1P18828 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC19.77■□□□□ 0.76
Sdc1P18828 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sdc1P18828 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC19.77■□□□□ 0.76
Sdc1P18828 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sdc1P18828 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.75
Sdc1P18828 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Sdc1P18828 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Sdc1P18828 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
Sdc1P18828 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.76■□□□□ 0.75
Sdc1P18828 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC19.76■□□□□ 0.75
Sdc1P18828 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Sdc1P18828 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Sdc1P18828 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.75■□□□□ 0.75
Sdc1P18828 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
Sdc1P18828 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Sdc1P18828 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Sdc1P18828 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sdc1P18828 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sdc1P18828 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sdc1P18828 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.73■□□□□ 0.75
Sdc1P18828 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Sdc1P18828 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.73■□□□□ 0.75
Sdc1P18828 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sdc1P18828 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sdc1P18828 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sdc1P18828 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sdc1P18828 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
Sdc1P18828 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.72■□□□□ 0.75
Sdc1P18828 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sdc1P18828 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sdc1P18828 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sdc1P18828 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sdc1P18828 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sdc1P18828 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Sdc1P18828 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sdc1P18828 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sdc1P18828 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Sdc1P18828 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.68■□□□□ 0.74
Sdc1P18828 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Sdc1P18828 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sdc1P18828 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Sdc1P18828 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc1P18828 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc1P18828 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc1P18828 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc1P18828 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc1P18828 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Sdc1P18828 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.66■□□□□ 0.74
Sdc1P18828 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc1P18828 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc1P18828 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Sdc1P18828 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Sdc1P18828 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Sdc1P18828 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sdc1P18828 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sdc1P18828 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sdc1P18828 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Sdc1P18828 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Sdc1P18828 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Sdc1P18828 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
Sdc1P18828 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc1P18828 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
Sdc1P18828 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc1P18828 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms