Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trbv5A0A0B4J1G9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trbv5A0A0B4J1G9 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv5A0A0B4J1G9 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv5A0A0B4J1G9 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trbv5A0A0B4J1G9 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trbv5A0A0B4J1G9 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trbv5A0A0B4J1G9 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Trbv5A0A0B4J1G9 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trbv5A0A0B4J1G9 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trbv5A0A0B4J1G9 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trbv5A0A0B4J1G9 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trbv5A0A0B4J1G9 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC19.38■□□□□ 0.69
Trbv5A0A0B4J1G9 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trbv5A0A0B4J1G9 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trbv5A0A0B4J1G9 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trbv5A0A0B4J1G9 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trbv5A0A0B4J1G9 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trbv5A0A0B4J1G9 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Trbv5A0A0B4J1G9 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trbv5A0A0B4J1G9 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv5A0A0B4J1G9 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv5A0A0B4J1G9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC19.34■□□□□ 0.69
Trbv5A0A0B4J1G9 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trbv5A0A0B4J1G9 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
Trbv5A0A0B4J1G9 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv5A0A0B4J1G9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv5A0A0B4J1G9 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trbv5A0A0B4J1G9 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trbv5A0A0B4J1G9 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv5A0A0B4J1G9 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv5A0A0B4J1G9 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv5A0A0B4J1G9 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv5A0A0B4J1G9 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv5A0A0B4J1G9 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv5A0A0B4J1G9 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv5A0A0B4J1G9 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trbv5A0A0B4J1G9 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Trbv5A0A0B4J1G9 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv5A0A0B4J1G9 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv5A0A0B4J1G9 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv5A0A0B4J1G9 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trbv5A0A0B4J1G9 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trbv5A0A0B4J1G9 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trbv5A0A0B4J1G9 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trbv5A0A0B4J1G9 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trbv5A0A0B4J1G9 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trbv5A0A0B4J1G9 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.28■□□□□ 0.68
Trbv5A0A0B4J1G9 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trbv5A0A0B4J1G9 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trbv5A0A0B4J1G9 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trbv5A0A0B4J1G9 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trbv5A0A0B4J1G9 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.26■□□□□ 0.67
Trbv5A0A0B4J1G9 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv5A0A0B4J1G9 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv5A0A0B4J1G9 Gm25262-201ENSMUST00000174934 133 ntBASIC19.25■□□□□ 0.67
Trbv5A0A0B4J1G9 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv5A0A0B4J1G9 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv5A0A0B4J1G9 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv5A0A0B4J1G9 AC166822.3-201ENSMUST00000227394 661 ntBASIC19.24■□□□□ 0.67
Trbv5A0A0B4J1G9 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
Trbv5A0A0B4J1G9 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC19.23■□□□□ 0.67
Trbv5A0A0B4J1G9 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trbv5A0A0B4J1G9 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trbv5A0A0B4J1G9 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trbv5A0A0B4J1G9 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trbv5A0A0B4J1G9 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trbv5A0A0B4J1G9 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trbv5A0A0B4J1G9 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.21■□□□□ 0.67
Trbv5A0A0B4J1G9 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Trbv5A0A0B4J1G9 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Trbv5A0A0B4J1G9 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv5A0A0B4J1G9 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv5A0A0B4J1G9 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv5A0A0B4J1G9 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Trbv5A0A0B4J1G9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv5A0A0B4J1G9 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv5A0A0B4J1G9 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv5A0A0B4J1G9 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv5A0A0B4J1G9 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Trbv5A0A0B4J1G9 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv5A0A0B4J1G9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv5A0A0B4J1G9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trbv5A0A0B4J1G9 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trbv5A0A0B4J1G9 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trbv5A0A0B4J1G9 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trbv5A0A0B4J1G9 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trbv5A0A0B4J1G9 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.16■□□□□ 0.66
Trbv5A0A0B4J1G9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trbv5A0A0B4J1G9 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trbv5A0A0B4J1G9 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trbv5A0A0B4J1G9 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.14■□□□□ 0.66
Trbv5A0A0B4J1G9 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Trbv5A0A0B4J1G9 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trbv5A0A0B4J1G9 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.14■□□□□ 0.65
Trbv5A0A0B4J1G9 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trbv5A0A0B4J1G9 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv5A0A0B4J1G9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv5A0A0B4J1G9 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv5A0A0B4J1G9 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms