Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.93■□□□□ 0.94
HOXC11O43248 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.93■□□□□ 0.94
HOXC11O43248 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC11O43248 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.92■□□□□ 0.94
HOXC11O43248 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC11O43248 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.92■□□□□ 0.94
HOXC11O43248 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC11O43248 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
HOXC11O43248 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
HOXC11O43248 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.92■□□□□ 0.94
HOXC11O43248 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC11O43248 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.92■□□□□ 0.94
HOXC11O43248 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.92■□□□□ 0.94
HOXC11O43248 AC069544.1-201ENST00000609399 999 ntBASIC20.92■□□□□ 0.94
HOXC11O43248 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC11O43248 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC11O43248 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.92■□□□□ 0.94
HOXC11O43248 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC11O43248 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC11O43248 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
HOXC11O43248 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC11O43248 POM121L13P-201ENST00000422362 380 ntBASIC20.91■□□□□ 0.94
HOXC11O43248 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.91■□□□□ 0.94
HOXC11O43248 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC11O43248 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC11O43248 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC11O43248 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.91■□□□□ 0.94
HOXC11O43248 RN7SL471P-201ENST00000580476 299 ntBASIC20.91■□□□□ 0.94
HOXC11O43248 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC11O43248 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC11O43248 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.91■□□□□ 0.94
HOXC11O43248 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC11O43248 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.9■□□□□ 0.94
HOXC11O43248 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.9■□□□□ 0.94
HOXC11O43248 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.9■□□□□ 0.94
HOXC11O43248 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC11O43248 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HOXC11O43248 UBE2SP1-201ENST00000450587 669 ntBASIC20.9■□□□□ 0.94
HOXC11O43248 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC11O43248 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC11O43248 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HOXC11O43248 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC11O43248 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC11O43248 AC233263.1-201ENST00000578059 224 ntBASIC20.9■□□□□ 0.94
HOXC11O43248 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HOXC11O43248 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC11O43248 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC11O43248 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HOXC11O43248 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
HOXC11O43248 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HOXC11O43248 Z98882.1-201ENST00000622160 2253 ntBASIC20.89■□□□□ 0.94
HOXC11O43248 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HOXC11O43248 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HOXC11O43248 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC11O43248 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC11O43248 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.89■□□□□ 0.93
HOXC11O43248 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.89■□□□□ 0.93
HOXC11O43248 RPPH1-201ENST00000516869 333 ntBASIC20.89■□□□□ 0.93
HOXC11O43248 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC11O43248 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC11O43248 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXC11O43248 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC11O43248 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC11O43248 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
HOXC11O43248 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC11O43248 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC11O43248 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HOXC11O43248 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.88■□□□□ 0.93
HOXC11O43248 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.88■□□□□ 0.93
HOXC11O43248 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.88■□□□□ 0.93
HOXC11O43248 AC005829.2-201ENST00000571422 1056 ntBASIC20.88■□□□□ 0.93
HOXC11O43248 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXC11O43248 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.88■□□□□ 0.93
HOXC11O43248 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms