Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
KRT39Q6A163 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
KRT39Q6A163 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC22.17■■□□□ 1.14
KRT39Q6A163 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT39Q6A163 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
KRT39Q6A163 AC007322.1-201ENST00000426983 750 ntBASIC22.17■■□□□ 1.14
KRT39Q6A163 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.17■■□□□ 1.14
KRT39Q6A163 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.17■■□□□ 1.14
KRT39Q6A163 AC016405.3-201ENST00000607710 860 ntBASIC22.17■■□□□ 1.14
KRT39Q6A163 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.17■■□□□ 1.14
KRT39Q6A163 FEM1AP1-201ENST00000431297 1995 ntBASIC22.17■■□□□ 1.14
KRT39Q6A163 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
KRT39Q6A163 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT39Q6A163 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT39Q6A163 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
KRT39Q6A163 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC22.17■■□□□ 1.14
KRT39Q6A163 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT39Q6A163 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT39Q6A163 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT39Q6A163 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT39Q6A163 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
KRT39Q6A163 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.16■■□□□ 1.14
KRT39Q6A163 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT39Q6A163 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
KRT39Q6A163 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT39Q6A163 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
KRT39Q6A163 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT39Q6A163 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.16■■□□□ 1.14
KRT39Q6A163 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT39Q6A163 AC080038.1-201ENST00000611274 1154 ntBASIC22.16■■□□□ 1.14
KRT39Q6A163 MIR2861-201ENST00000636310 90 ntBASIC22.16■■□□□ 1.14
KRT39Q6A163 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT39Q6A163 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
KRT39Q6A163 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT39Q6A163 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.16■■□□□ 1.14
KRT39Q6A163 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
KRT39Q6A163 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC22.15■■□□□ 1.14
KRT39Q6A163 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC22.15■■□□□ 1.14
KRT39Q6A163 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC22.15■■□□□ 1.14
KRT39Q6A163 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.15■■□□□ 1.14
KRT39Q6A163 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT39Q6A163 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.15■■□□□ 1.14
KRT39Q6A163 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
KRT39Q6A163 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT39Q6A163 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
KRT39Q6A163 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.15■■□□□ 1.14
KRT39Q6A163 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
KRT39Q6A163 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
KRT39Q6A163 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
KRT39Q6A163 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.14
KRT39Q6A163 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.14
KRT39Q6A163 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC22.14■■□□□ 1.14
KRT39Q6A163 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC22.14■■□□□ 1.14
KRT39Q6A163 AL157384.1-201ENST00000445995 2473 ntBASIC22.14■■□□□ 1.13
KRT39Q6A163 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
KRT39Q6A163 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
KRT39Q6A163 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
KRT39Q6A163 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC22.14■■□□□ 1.13
KRT39Q6A163 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
KRT39Q6A163 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC22.14■■□□□ 1.13
KRT39Q6A163 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC22.14■■□□□ 1.13
KRT39Q6A163 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC22.14■■□□□ 1.13
KRT39Q6A163 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.14■■□□□ 1.13
KRT39Q6A163 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
KRT39Q6A163 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.14■■□□□ 1.13
KRT39Q6A163 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
KRT39Q6A163 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.13
KRT39Q6A163 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
KRT39Q6A163 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC22.14■■□□□ 1.13
KRT39Q6A163 AL121603.2-201ENST00000557373 2117 ntBASIC22.13■■□□□ 1.13
KRT39Q6A163 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
KRT39Q6A163 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC22.13■■□□□ 1.13
KRT39Q6A163 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC22.13■■□□□ 1.13
KRT39Q6A163 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.13■■□□□ 1.13
KRT39Q6A163 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
KRT39Q6A163 RARRES2P4-201ENST00000514074 484 ntBASIC22.13■■□□□ 1.13
KRT39Q6A163 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.13■■□□□ 1.13
KRT39Q6A163 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC22.13■■□□□ 1.13
KRT39Q6A163 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC22.13■■□□□ 1.13
KRT39Q6A163 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.13■■□□□ 1.13
KRT39Q6A163 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
KRT39Q6A163 AC073111.5-205ENST00000641717 521 ntBASIC22.13■■□□□ 1.13
KRT39Q6A163 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC22.13■■□□□ 1.13
KRT39Q6A163 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
KRT39Q6A163 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
KRT39Q6A163 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
KRT39Q6A163 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
KRT39Q6A163 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.13■■□□□ 1.13
KRT39Q6A163 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
KRT39Q6A163 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC22.12■■□□□ 1.13
KRT39Q6A163 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.12■■□□□ 1.13
KRT39Q6A163 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
KRT39Q6A163 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms