Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.6■□□□□ 0.89
TRIM38O00635 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.6■□□□□ 0.89
TRIM38O00635 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
TRIM38O00635 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
TRIM38O00635 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.6■□□□□ 0.89
TRIM38O00635 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM38O00635 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM38O00635 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM38O00635 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRIM38O00635 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TRIM38O00635 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.59■□□□□ 0.89
TRIM38O00635 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.59■□□□□ 0.89
TRIM38O00635 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM38O00635 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM38O00635 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM38O00635 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
TRIM38O00635 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM38O00635 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM38O00635 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TRIM38O00635 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM38O00635 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM38O00635 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM38O00635 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM38O00635 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM38O00635 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM38O00635 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM38O00635 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM38O00635 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.58■□□□□ 0.89
TRIM38O00635 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.58■□□□□ 0.89
TRIM38O00635 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
TRIM38O00635 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.58■□□□□ 0.89
TRIM38O00635 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
TRIM38O00635 ITM2C-210ENST00000620962 501 ntBASIC20.58■□□□□ 0.89
TRIM38O00635 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
TRIM38O00635 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM38O00635 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.58■□□□□ 0.88
TRIM38O00635 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM38O00635 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
TRIM38O00635 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM38O00635 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.58■□□□□ 0.88
TRIM38O00635 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
TRIM38O00635 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM38O00635 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM38O00635 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.57■□□□□ 0.88
TRIM38O00635 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
TRIM38O00635 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM38O00635 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM38O00635 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM38O00635 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TRIM38O00635 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM38O00635 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM38O00635 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM38O00635 RBM17P2-201ENST00000616397 1405 ntBASIC20.56■□□□□ 0.88
TRIM38O00635 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM38O00635 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM38O00635 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM38O00635 KRT18P29-201ENST00000397031 1267 ntBASIC20.56■□□□□ 0.88
TRIM38O00635 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM38O00635 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.56■□□□□ 0.88
TRIM38O00635 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM38O00635 AC083880.1-201ENST00000608266 535 ntBASIC20.56■□□□□ 0.88
TRIM38O00635 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TRIM38O00635 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM38O00635 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM38O00635 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM38O00635 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM38O00635 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM38O00635 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM38O00635 KRT16P2-201ENST00000414673 1423 ntBASIC20.55■□□□□ 0.88
TRIM38O00635 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM38O00635 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TRIM38O00635 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM38O00635 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TRIM38O00635 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM38O00635 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
TRIM38O00635 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM38O00635 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM38O00635 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM38O00635 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM38O00635 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms