Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 AC104564.3-201ENST00000582367 638 ntBASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 AL356740.2-201ENST00000601559 647 ntBASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
COMMD3-BMI1R4GMX3 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 MIR3621-201ENST00000580529 85 ntBASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 pRNA.6-201ENST00000610482 90 ntBASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 pRNA.5-201ENST00000612139 90 ntBASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 pRNA.11-201ENST00000618423 90 ntBASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 pRNA.13-201ENST00000619112 90 ntBASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 LTB4R2-202ENST00000528054 3092 ntBASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3-BMI1R4GMX3 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 AC006128.1-201ENST00000624704 1661 ntBASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 AC099791.2-201ENST00000605725 427 ntBASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 AL031602.1-201ENST00000633169 911 ntBASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3-BMI1R4GMX3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COMMD3-BMI1R4GMX3 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
COMMD3-BMI1R4GMX3 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COMMD3-BMI1R4GMX3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms