Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.83■■□□□ 1.41
TRERF1Q96PN7 CYP2T3P-201ENST00000601990 817 ntBASIC23.83■■□□□ 1.41
TRERF1Q96PN7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.41
TRERF1Q96PN7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
TRERF1Q96PN7 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.4
TRERF1Q96PN7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.83■■□□□ 1.4
TRERF1Q96PN7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.83■■□□□ 1.4
TRERF1Q96PN7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC23.83■■□□□ 1.4
TRERF1Q96PN7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC23.83■■□□□ 1.4
TRERF1Q96PN7 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.83■■□□□ 1.4
TRERF1Q96PN7 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.83■■□□□ 1.4
TRERF1Q96PN7 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC23.82■■□□□ 1.4
TRERF1Q96PN7 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.81■■□□□ 1.4
TRERF1Q96PN7 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.81■■□□□ 1.4
TRERF1Q96PN7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 AC007322.3-201ENST00000426526 701 ntBASIC23.81■■□□□ 1.4
TRERF1Q96PN7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.81■■□□□ 1.4
TRERF1Q96PN7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.8■■□□□ 1.4
TRERF1Q96PN7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 ITM2C-210ENST00000620962 501 ntBASIC23.8■■□□□ 1.4
TRERF1Q96PN7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRERF1Q96PN7 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 MCRIP2P1-201ENST00000394346 511 ntBASIC23.79■■□□□ 1.4
TRERF1Q96PN7 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 ECEL1P1-201ENST00000373592 1742 ntBASIC23.79■■□□□ 1.4
TRERF1Q96PN7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC23.79■■□□□ 1.4
TRERF1Q96PN7 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 KRT18P29-201ENST00000397031 1267 ntBASIC23.78■■□□□ 1.4
TRERF1Q96PN7 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 AC066615.1-201ENST00000640911 628 ntBASIC23.78■■□□□ 1.4
TRERF1Q96PN7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRERF1Q96PN7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
TRERF1Q96PN7 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms