Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
SHROOM4Q9ULL8 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
SHROOM4Q9ULL8 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
SHROOM4Q9ULL8 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
SHROOM4Q9ULL8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC39.54■■■■□ 3.92
SHROOM4Q9ULL8 AL445228.2-201ENST00000605589 952 ntBASIC39.54■■■■□ 3.92
SHROOM4Q9ULL8 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
SHROOM4Q9ULL8 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC39.52■■■■□ 3.92
SHROOM4Q9ULL8 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC39.52■■■■□ 3.92
SHROOM4Q9ULL8 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC39.52■■■■□ 3.92
SHROOM4Q9ULL8 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC39.52■■■■□ 3.92
SHROOM4Q9ULL8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC39.52■■■■□ 3.92
SHROOM4Q9ULL8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC39.52■■■■□ 3.92
SHROOM4Q9ULL8 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC39.51■■■■□ 3.92
SHROOM4Q9ULL8 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC39.51■■■■□ 3.92
SHROOM4Q9ULL8 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
SHROOM4Q9ULL8 RPS2P55-201ENST00000397318 883 ntBASIC39.51■■■■□ 3.92
SHROOM4Q9ULL8 AC107956.1-201ENST00000494359 873 ntBASIC39.51■■■■□ 3.92
SHROOM4Q9ULL8 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
SHROOM4Q9ULL8 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC39.51■■■■□ 3.92
SHROOM4Q9ULL8 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
SHROOM4Q9ULL8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
SHROOM4Q9ULL8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC39.5■■■■□ 3.91
SHROOM4Q9ULL8 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC39.5■■■■□ 3.91
SHROOM4Q9ULL8 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC39.5■■■■□ 3.91
SHROOM4Q9ULL8 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC39.5■■■■□ 3.91
SHROOM4Q9ULL8 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC39.5■■■■□ 3.91
SHROOM4Q9ULL8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC39.49■■■■□ 3.91
SHROOM4Q9ULL8 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC39.49■■■■□ 3.91
SHROOM4Q9ULL8 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
SHROOM4Q9ULL8 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC39.49■■■■□ 3.91
SHROOM4Q9ULL8 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC39.49■■■■□ 3.91
SHROOM4Q9ULL8 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC39.49■■■■□ 3.91
SHROOM4Q9ULL8 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC39.48■■■■□ 3.91
SHROOM4Q9ULL8 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC39.48■■■■□ 3.91
SHROOM4Q9ULL8 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC39.48■■■■□ 3.91
SHROOM4Q9ULL8 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC39.48■■■■□ 3.91
SHROOM4Q9ULL8 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC39.48■■■■□ 3.91
SHROOM4Q9ULL8 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC39.48■■■■□ 3.91
SHROOM4Q9ULL8 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC39.48■■■■□ 3.91
SHROOM4Q9ULL8 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC39.47■■■■□ 3.91
SHROOM4Q9ULL8 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
SHROOM4Q9ULL8 SOX15-203ENST00000570788 1093 ntBASIC39.46■■■■□ 3.91
SHROOM4Q9ULL8 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC39.46■■■■□ 3.91
SHROOM4Q9ULL8 AC092368.3-202ENST00000574180 1591 ntBASIC39.46■■■■□ 3.91
SHROOM4Q9ULL8 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC39.46■■■■□ 3.91
SHROOM4Q9ULL8 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC39.46■■■■□ 3.91
SHROOM4Q9ULL8 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
SHROOM4Q9ULL8 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC39.46■■■■□ 3.91
SHROOM4Q9ULL8 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC39.46■■■■□ 3.91
SHROOM4Q9ULL8 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
SHROOM4Q9ULL8 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC39.45■■■■□ 3.91
SHROOM4Q9ULL8 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC39.45■■■■□ 3.91
SHROOM4Q9ULL8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC39.45■■■■□ 3.91
SHROOM4Q9ULL8 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC39.45■■■■□ 3.91
SHROOM4Q9ULL8 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC39.45■■■■□ 3.91
SHROOM4Q9ULL8 KRT17P2-201ENST00000300992 1314 ntBASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 AC091799.1-201ENST00000422823 811 ntBASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 SNX21-213ENST00000614929 587 ntTSL 5 BASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
SHROOM4Q9ULL8 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 TSPY7P-201ENST00000431358 1114 ntBASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 AL049637.2-201ENST00000641778 930 ntBASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC39.43■■■■□ 3.9
SHROOM4Q9ULL8 POM121L13P-201ENST00000422362 380 ntBASIC39.43■■■■□ 3.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms