Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.43■□□□□ 0.86
MKS1Q9NXB0 AC061975.6-201ENST00000579045 1553 ntBASIC20.42■□□□□ 0.86
MKS1Q9NXB0 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
MKS1Q9NXB0 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MKS1Q9NXB0 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
MKS1Q9NXB0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
MKS1Q9NXB0 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 UNC93B3-201ENST00000308076 687 ntBASIC20.39■□□□□ 0.85
MKS1Q9NXB0 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MKS1Q9NXB0 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms