Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.54■□□□□ 0.4
PDLIM4P50479 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PDLIM4P50479 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PDLIM4P50479 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PDLIM4P50479 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.53■□□□□ 0.4
PDLIM4P50479 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PDLIM4P50479 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
PDLIM4P50479 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 DUSP5P2-201ENST00000426873 1033 ntBASIC17.53■□□□□ 0.4
PDLIM4P50479 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.53■□□□□ 0.4
PDLIM4P50479 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.53■□□□□ 0.4
PDLIM4P50479 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.53■□□□□ 0.4
PDLIM4P50479 AC083880.1-201ENST00000608266 535 ntBASIC17.53■□□□□ 0.4
PDLIM4P50479 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.53■□□□□ 0.4
PDLIM4P50479 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM4P50479 AC092667.1-201ENST00000434301 2586 ntBASIC17.52■□□□□ 0.4
PDLIM4P50479 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM4P50479 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM4P50479 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM4P50479 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM4P50479 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
PDLIM4P50479 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
PDLIM4P50479 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PDLIM4P50479 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
PDLIM4P50479 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.52■□□□□ 0.4
PDLIM4P50479 FAM21FP-204ENST00000608637 956 ntBASIC17.52■□□□□ 0.4
PDLIM4P50479 MYC-209ENST00000641252 345 ntBASIC17.52■□□□□ 0.4
PDLIM4P50479 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.52■□□□□ 0.39
PDLIM4P50479 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM4P50479 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM4P50479 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.52■□□□□ 0.39
PDLIM4P50479 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM4P50479 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM4P50479 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PDLIM4P50479 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.51■□□□□ 0.39
PDLIM4P50479 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.51■□□□□ 0.39
PDLIM4P50479 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PDLIM4P50479 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PDLIM4P50479 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM4P50479 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.51■□□□□ 0.39
PDLIM4P50479 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PDLIM4P50479 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PDLIM4P50479 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
PDLIM4P50479 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM4P50479 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PDLIM4P50479 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.5■□□□□ 0.39
PDLIM4P50479 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.5■□□□□ 0.39
PDLIM4P50479 AC091799.1-201ENST00000422823 811 ntBASIC17.5■□□□□ 0.39
PDLIM4P50479 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.5■□□□□ 0.39
PDLIM4P50479 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
PDLIM4P50479 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM4P50479 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.5■□□□□ 0.39
PDLIM4P50479 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.5■□□□□ 0.39
PDLIM4P50479 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PDLIM4P50479 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.5■□□□□ 0.39
PDLIM4P50479 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PDLIM4P50479 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PDLIM4P50479 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM4P50479 RNF165-205ENST00000588679 2904 ntBASIC17.5■□□□□ 0.39
PDLIM4P50479 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PDLIM4P50479 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM4P50479 AC080038.3-201ENST00000623346 1952 ntBASIC17.49■□□□□ 0.39
PDLIM4P50479 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM4P50479 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms