Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCF1Q9UBD9 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 ABHD17AP1-201ENST00000358206 933 ntBASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLCF1Q9UBD9 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 CYP2T3P-201ENST00000601990 817 ntBASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLCF1Q9UBD9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 AC244015.2-201ENST00000616358 1861 ntBASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 AC091874.3-201ENST00000512672 1195 ntBASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 AC083880.1-201ENST00000608266 535 ntBASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCF1Q9UBD9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 MCRIP2P1-201ENST00000394346 511 ntBASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 AL355472.2-201ENST00000422958 438 ntBASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 DUSP5P2-201ENST00000426873 1033 ntBASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 AC116050.2-201ENST00000612102 1779 ntBASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CLCF1Q9UBD9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 EP400NL-214ENST00000641289 2402 ntBASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms