Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.34■□□□□ 0.85
HOXC4P09017 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC4P09017 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC4P09017 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC4P09017 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC4P09017 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.34■□□□□ 0.85
HOXC4P09017 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.34■□□□□ 0.85
HOXC4P09017 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC4P09017 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC4P09017 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC4P09017 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.33■□□□□ 0.85
HOXC4P09017 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC4P09017 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC4P09017 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC4P09017 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC4P09017 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
HOXC4P09017 ABHD17AP1-201ENST00000358206 933 ntBASIC20.33■□□□□ 0.85
HOXC4P09017 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC4P09017 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
HOXC4P09017 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC4P09017 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.33■□□□□ 0.85
HOXC4P09017 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC4P09017 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.33■□□□□ 0.85
HOXC4P09017 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.33■□□□□ 0.85
HOXC4P09017 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
HOXC4P09017 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HOXC4P09017 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HOXC4P09017 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.32■□□□□ 0.84
HOXC4P09017 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HOXC4P09017 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC4P09017 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.32■□□□□ 0.84
HOXC4P09017 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HOXC4P09017 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC4P09017 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.32■□□□□ 0.84
HOXC4P09017 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.32■□□□□ 0.84
HOXC4P09017 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.32■□□□□ 0.84
HOXC4P09017 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC4P09017 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
HOXC4P09017 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
HOXC4P09017 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
HOXC4P09017 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC4P09017 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC4P09017 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC4P09017 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC4P09017 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
HOXC4P09017 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.31■□□□□ 0.84
HOXC4P09017 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.31■□□□□ 0.84
HOXC4P09017 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXC4P09017 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.31■□□□□ 0.84
HOXC4P09017 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXC4P09017 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
HOXC4P09017 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC4P09017 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC4P09017 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC4P09017 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC4P09017 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HOXC4P09017 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC4P09017 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.3■□□□□ 0.84
HOXC4P09017 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC4P09017 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC4P09017 EP400NL-214ENST00000641289 2402 ntBASIC20.3■□□□□ 0.84
HOXC4P09017 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC4P09017 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC4P09017 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
HOXC4P09017 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.3■□□□□ 0.84
HOXC4P09017 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.3■□□□□ 0.84
HOXC4P09017 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC4P09017 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC4P09017 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC4P09017 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
HOXC4P09017 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC4P09017 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
HOXC4P09017 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC4P09017 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.29■□□□□ 0.84
HOXC4P09017 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.29■□□□□ 0.84
HOXC4P09017 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.29■□□□□ 0.84
HOXC4P09017 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC4P09017 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC4P09017 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC4P09017 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.29■□□□□ 0.84
HOXC4P09017 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.29■□□□□ 0.84
HOXC4P09017 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.29■□□□□ 0.84
HOXC4P09017 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC4P09017 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC4P09017 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC4P09017 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
HOXC4P09017 AC087633.2-202ENST00000565166 1439 ntBASIC20.28■□□□□ 0.84
HOXC4P09017 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC4P09017 Z98882.1-201ENST00000622160 2253 ntBASIC20.28■□□□□ 0.84
HOXC4P09017 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms