Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC26.15■■□□□ 1.78
NPHP1O15259 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP1O15259 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP1O15259 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC26.15■■□□□ 1.78
NPHP1O15259 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.15■■□□□ 1.78
NPHP1O15259 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP1O15259 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
NPHP1O15259 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
NPHP1O15259 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.78
NPHP1O15259 C11orf96-202ENST00000528572 1834 ntBASIC26.14■■□□□ 1.78
NPHP1O15259 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
NPHP1O15259 MFF-205ENST00000354503 1085 ntTSL 2 BASIC26.14■■□□□ 1.78
NPHP1O15259 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.78
NPHP1O15259 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.78
NPHP1O15259 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC26.14■■□□□ 1.78
NPHP1O15259 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
NPHP1O15259 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
NPHP1O15259 RPPH1-201ENST00000516869 333 ntBASIC26.14■■□□□ 1.78
NPHP1O15259 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC26.14■■□□□ 1.78
NPHP1O15259 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC26.14■■□□□ 1.78
NPHP1O15259 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC26.14■■□□□ 1.78
NPHP1O15259 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC26.14■■□□□ 1.78
NPHP1O15259 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
NPHP1O15259 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC26.14■■□□□ 1.78
NPHP1O15259 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
NPHP1O15259 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.14■■□□□ 1.77
NPHP1O15259 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
NPHP1O15259 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
NPHP1O15259 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
NPHP1O15259 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC26.13■■□□□ 1.77
NPHP1O15259 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
NPHP1O15259 KRT18P68-201ENST00000392293 1000 ntBASIC26.13■■□□□ 1.77
NPHP1O15259 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC26.13■■□□□ 1.77
NPHP1O15259 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC26.13■■□□□ 1.77
NPHP1O15259 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
NPHP1O15259 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
NPHP1O15259 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
NPHP1O15259 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC26.13■■□□□ 1.77
NPHP1O15259 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
NPHP1O15259 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC26.13■■□□□ 1.77
NPHP1O15259 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
NPHP1O15259 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NPHP1O15259 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
NPHP1O15259 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC26.12■■□□□ 1.77
NPHP1O15259 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
NPHP1O15259 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
NPHP1O15259 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
NPHP1O15259 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
NPHP1O15259 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC26.12■■□□□ 1.77
NPHP1O15259 HES2-205ENST00000487437 968 ntTSL 3 BASIC26.12■■□□□ 1.77
NPHP1O15259 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC26.12■■□□□ 1.77
NPHP1O15259 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC26.12■■□□□ 1.77
NPHP1O15259 NFE2L3P1-201ENST00000588207 1959 ntBASIC26.12■■□□□ 1.77
NPHP1O15259 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
NPHP1O15259 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
NPHP1O15259 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
NPHP1O15259 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
NPHP1O15259 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
NPHP1O15259 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC26.11■■□□□ 1.77
NPHP1O15259 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC26.11■■□□□ 1.77
NPHP1O15259 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC26.11■■□□□ 1.77
NPHP1O15259 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC26.11■■□□□ 1.77
NPHP1O15259 RNF121-214ENST00000533380 870 ntTSL 3 BASIC26.11■■□□□ 1.77
NPHP1O15259 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC26.11■■□□□ 1.77
NPHP1O15259 SPIB-206ENST00000596074 847 ntTSL 2 BASIC26.11■■□□□ 1.77
NPHP1O15259 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC26.11■■□□□ 1.77
NPHP1O15259 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC26.11■■□□□ 1.77
NPHP1O15259 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
NPHP1O15259 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
NPHP1O15259 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
NPHP1O15259 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
NPHP1O15259 AC007322.3-201ENST00000426526 701 ntBASIC26.1■■□□□ 1.77
NPHP1O15259 VMO1-204ENST00000441199 741 ntTSL 2 BASIC26.1■■□□□ 1.77
NPHP1O15259 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC26.1■■□□□ 1.77
NPHP1O15259 OR2A1-AS1-207ENST00000486094 819 ntBASIC26.1■■□□□ 1.77
NPHP1O15259 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
NPHP1O15259 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
NPHP1O15259 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
NPHP1O15259 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
NPHP1O15259 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP1O15259 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP1O15259 CASK-201ENST00000378154 2494 ntTSL 5 BASIC26.09■■□□□ 1.77
NPHP1O15259 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP1O15259 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP1O15259 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP1O15259 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP1O15259 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC26.09■■□□□ 1.77
NPHP1O15259 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP1O15259 REXO2-208ENST00000539754 791 ntTSL 2 BASIC26.09■■□□□ 1.77
NPHP1O15259 SOX15-203ENST00000570788 1093 ntBASIC26.09■■□□□ 1.77
NPHP1O15259 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC26.09■■□□□ 1.77
NPHP1O15259 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC26.09■■□□□ 1.77
NPHP1O15259 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC26.09■■□□□ 1.77
NPHP1O15259 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC26.09■■□□□ 1.77
NPHP1O15259 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC26.09■■□□□ 1.77
NPHP1O15259 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC26.09■■□□□ 1.77
NPHP1O15259 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC26.08■■□□□ 1.77
NPHP1O15259 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP1O15259 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP1O15259 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms