Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 CROCCP5-201ENST00000436658 830 ntBASIC19.72■□□□□ 0.75
SCN3AQ9NY46 AC245052.3-201ENST00000450182 901 ntBASIC19.72■□□□□ 0.75
SCN3AQ9NY46 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SCN3AQ9NY46 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN3AQ9NY46 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 AC091799.1-201ENST00000422823 811 ntBASIC19.7■□□□□ 0.74
SCN3AQ9NY46 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 SLC7A5P1-201ENST00000568957 537 ntBASIC19.7■□□□□ 0.74
SCN3AQ9NY46 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN3AQ9NY46 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN3AQ9NY46 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 AC007322.1-201ENST00000426983 750 ntBASIC19.68■□□□□ 0.74
SCN3AQ9NY46 CYP2T1P-201ENST00000432607 1285 ntBASIC19.68■□□□□ 0.74
SCN3AQ9NY46 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 TERF1P5-201ENST00000477545 1207 ntBASIC19.68■□□□□ 0.74
SCN3AQ9NY46 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 AC016405.3-201ENST00000607710 860 ntBASIC19.68■□□□□ 0.74
SCN3AQ9NY46 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN3AQ9NY46 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms