Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
SENP3Q9H4L4 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SENP3Q9H4L4 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SENP3Q9H4L4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SENP3Q9H4L4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC30.34■■■□□ 2.45
SENP3Q9H4L4 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC30.34■■■□□ 2.45
SENP3Q9H4L4 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SENP3Q9H4L4 REXO1L12P-201ENST00000622156 912 ntBASIC30.34■■■□□ 2.45
SENP3Q9H4L4 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
SENP3Q9H4L4 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SENP3Q9H4L4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SENP3Q9H4L4 AC092068.2-201ENST00000590491 1708 ntBASIC30.33■■■□□ 2.45
SENP3Q9H4L4 AC061975.6-201ENST00000579045 1553 ntBASIC30.33■■■□□ 2.45
SENP3Q9H4L4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 AC009652.1-201ENST00000528326 648 ntTSL 5 BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 AC003956.1-201ENST00000598450 356 ntTSL 3 BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
SENP3Q9H4L4 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 LRRIQ3-203ENST00000370911 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC30.32■■■□□ 2.44
SENP3Q9H4L4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC30.31■■■□□ 2.44
SENP3Q9H4L4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
SENP3Q9H4L4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
SENP3Q9H4L4 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC30.31■■■□□ 2.44
SENP3Q9H4L4 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC30.31■■■□□ 2.44
SENP3Q9H4L4 AC090515.5-201ENST00000560378 526 ntTSL 5 BASIC30.31■■■□□ 2.44
SENP3Q9H4L4 AC005014.3-201ENST00000605985 190 ntBASIC30.31■■■□□ 2.44
SENP3Q9H4L4 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
SENP3Q9H4L4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SENP3Q9H4L4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
SENP3Q9H4L4 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
SENP3Q9H4L4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC30.3■■■□□ 2.44
SENP3Q9H4L4 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC30.3■■■□□ 2.44
SENP3Q9H4L4 AC026616.1-201ENST00000523157 525 ntBASIC30.3■■■□□ 2.44
SENP3Q9H4L4 AC108673.2-201ENST00000608909 565 ntBASIC30.3■■■□□ 2.44
SENP3Q9H4L4 UCHL3-206ENST00000618773 1050 ntTSL 5 BASIC30.3■■■□□ 2.44
SENP3Q9H4L4 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SENP3Q9H4L4 MTCO1P15-201ENST00000529569 1526 ntBASIC30.3■■■□□ 2.44
SENP3Q9H4L4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC30.3■■■□□ 2.44
SENP3Q9H4L4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
SENP3Q9H4L4 RBM17P2-201ENST00000616397 1405 ntBASIC30.3■■■□□ 2.44
SENP3Q9H4L4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 KRT17P1-201ENST00000399211 1546 ntBASIC30.29■■■□□ 2.44
SENP3Q9H4L4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 AC026366.1-201ENST00000488803 879 ntBASIC30.29■■■□□ 2.44
SENP3Q9H4L4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 AC093648.1-201ENST00000623546 606 ntBASIC30.29■■■□□ 2.44
SENP3Q9H4L4 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SENP3Q9H4L4 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 MTCO2P3-201ENST00000442543 421 ntBASIC30.28■■■□□ 2.44
SENP3Q9H4L4 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 ACTR6P1-201ENST00000514311 1104 ntBASIC30.28■■■□□ 2.44
SENP3Q9H4L4 UNC93B5-201ENST00000530315 699 ntBASIC30.28■■■□□ 2.44
SENP3Q9H4L4 AC073611.1-201ENST00000550263 647 ntTSL 2 BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 AC008175.2-201ENST00000612840 297 ntBASIC30.28■■■□□ 2.44
SENP3Q9H4L4 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SENP3Q9H4L4 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC30.27■■■□□ 2.44
SENP3Q9H4L4 LTK-203ENST00000453182 2412 ntTSL 2 BASIC30.27■■■□□ 2.44
SENP3Q9H4L4 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3Q9H4L4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3Q9H4L4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3Q9H4L4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3Q9H4L4 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3Q9H4L4 SERPINH1P1-201ENST00000419794 1249 ntBASIC30.27■■■□□ 2.44
SENP3Q9H4L4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SENP3Q9H4L4 AP003097.1-201ENST00000530657 1135 ntBASIC30.27■■■□□ 2.44
SENP3Q9H4L4 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms