Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 AC068473.5-201ENST00000616428 2072 ntBASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 FAM197Y4-202ENST00000622692 608 ntBASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 CYP21A1P-202ENST00000354927 1481 ntBASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.23■■□□□ 1.31
UPF3AQ9H1J1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 AC127496.7-201ENST00000625110 1798 ntBASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 AC010542.4-201ENST00000563151 1910 ntBASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 OR2A1-AS1-207ENST00000486094 819 ntBASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 SOX15-203ENST00000570788 1093 ntBASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 NXN-202ENST00000537628 1340 ntTSL 3 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.22■■□□□ 1.31
UPF3AQ9H1J1 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 AC069544.1-201ENST00000609399 999 ntBASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPF3AQ9H1J1 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 HES2-205ENST00000487437 968 ntTSL 3 BASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 MIR4497-201ENST00000583208 89 ntBASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 AC080038.3-201ENST00000623346 1952 ntBASIC23.2■■□□□ 1.3
UPF3AQ9H1J1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 CRK-204ENST00000574295 1391 ntTSL 5 BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 REXO2-208ENST00000539754 791 ntTSL 2 BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 Z99916.2-201ENST00000604037 246 ntBASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 AC105020.6-201ENST00000621523 1217 ntBASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
UPF3AQ9H1J1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
UPF3AQ9H1J1 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.18■■□□□ 1.3
UPF3AQ9H1J1 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPF3AQ9H1J1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms