Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHFRQ96EP1 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHFRQ96EP1 MCRIP2P1-201ENST00000394346 511 ntBASIC21.25■□□□□ 0.99
CHFRQ96EP1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.25■□□□□ 0.99
CHFRQ96EP1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHFRQ96EP1 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.25■□□□□ 0.99
CHFRQ96EP1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CHFRQ96EP1 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.25■□□□□ 0.99
CHFRQ96EP1 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHFRQ96EP1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.25■□□□□ 0.99
CHFRQ96EP1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.25■□□□□ 0.99
CHFRQ96EP1 AP006294.2-201ENST00000641667 209 ntBASIC21.25■□□□□ 0.99
CHFRQ96EP1 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHFRQ96EP1 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.25■□□□□ 0.99
CHFRQ96EP1 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHFRQ96EP1 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CHFRQ96EP1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHFRQ96EP1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.24■□□□□ 0.99
CHFRQ96EP1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.24■□□□□ 0.99
CHFRQ96EP1 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHFRQ96EP1 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHFRQ96EP1 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.24■□□□□ 0.99
CHFRQ96EP1 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.24■□□□□ 0.99
CHFRQ96EP1 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHFRQ96EP1 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.24■□□□□ 0.99
CHFRQ96EP1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHFRQ96EP1 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHFRQ96EP1 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
CHFRQ96EP1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHFRQ96EP1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHFRQ96EP1 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHFRQ96EP1 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CHFRQ96EP1 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHFRQ96EP1 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHFRQ96EP1 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHFRQ96EP1 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHFRQ96EP1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHFRQ96EP1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHFRQ96EP1 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CHFRQ96EP1 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.22■□□□□ 0.99
CHFRQ96EP1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.22■□□□□ 0.99
CHFRQ96EP1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.22■□□□□ 0.99
CHFRQ96EP1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.22■□□□□ 0.99
CHFRQ96EP1 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.22■□□□□ 0.99
CHFRQ96EP1 AL589743.5-201ENST00000616611 1050 ntBASIC21.22■□□□□ 0.99
CHFRQ96EP1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHFRQ96EP1 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 RPS2P4-201ENST00000476944 856 ntBASIC21.21■□□□□ 0.99
CHFRQ96EP1 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.21■□□□□ 0.99
CHFRQ96EP1 UNC93B4-201ENST00000505679 747 ntBASIC21.21■□□□□ 0.99
CHFRQ96EP1 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 PNMA6B-201ENST00000538162 1200 ntBASIC21.21■□□□□ 0.99
CHFRQ96EP1 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 AL359736.2-201ENST00000621992 437 ntBASIC21.21■□□□□ 0.99
CHFRQ96EP1 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.21■□□□□ 0.99
CHFRQ96EP1 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHFRQ96EP1 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CHFRQ96EP1 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
CHFRQ96EP1 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.2■□□□□ 0.99
CHFRQ96EP1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.2■□□□□ 0.98
CHFRQ96EP1 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.2■□□□□ 0.98
CHFRQ96EP1 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CHFRQ96EP1 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.2■□□□□ 0.98
CHFRQ96EP1 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms