Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HDDC3Q8N4P3 AC133561.1-201ENST00000568600 2415 ntBASIC20.89■□□□□ 0.94
HDDC3Q8N4P3 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HDDC3Q8N4P3 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HDDC3Q8N4P3 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.89■□□□□ 0.94
HDDC3Q8N4P3 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.89■□□□□ 0.94
HDDC3Q8N4P3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 AC142381.4-202ENST00000563973 229 ntBASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 FAM21FP-204ENST00000608637 956 ntBASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDDC3Q8N4P3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 RPS2P4-201ENST00000476944 856 ntBASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 AC006058.3-201ENST00000606217 1069 ntBASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
HDDC3Q8N4P3 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 LSM12P1-201ENST00000411836 588 ntBASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 AC083880.1-201ENST00000608266 535 ntBASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.87■□□□□ 0.93
HDDC3Q8N4P3 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 AL355472.2-201ENST00000422958 438 ntBASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 AC091874.3-201ENST00000512672 1195 ntBASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
HDDC3Q8N4P3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 MYC-209ENST00000641252 345 ntBASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.85■□□□□ 0.93
HDDC3Q8N4P3 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 AC128676.1-201ENST00000454392 318 ntBASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDDC3Q8N4P3 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms