Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 POU5F1P4-201ENST00000413175 1085 ntBASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF549Q6P9A3 AC004854.2-201ENST00000608450 1441 ntBASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 AC121338.2-201ENST00000622535 1744 ntBASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 AC008175.2-201ENST00000612840 297 ntBASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.61■□□□□ 0.89
ZNF549Q6P9A3 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF549Q6P9A3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 SLC7A5P2-201ENST00000553010 536 ntBASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 AP001160.3-201ENST00000601484 763 ntBASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 RARRES2P11-201ENST00000635158 484 ntBASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
ZNF549Q6P9A3 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 DUX4L2-201ENST00000561772 1275 ntBASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 DUX4L6-201ENST00000626483 1275 ntBASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 DUX4L1-201ENST00000627662 1275 ntBASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 DUX4L8-201ENST00000629013 1275 ntBASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 DUX4L3-201ENST00000630187 1275 ntBASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 DUX4L7-201ENST00000630678 1275 ntBASIC20.58■□□□□ 0.89
ZNF549Q6P9A3 DUX4L5-201ENST00000630834 1275 ntBASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms