Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 AC008175.2-201ENST00000612840 297 ntBASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 AC073111.5-205ENST00000641717 521 ntBASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.3■□□□□ 0.84
PTCHD3Q3KNS1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD3Q3KNS1 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 POU5F1P4-201ENST00000413175 1085 ntBASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 CDCA4P2-201ENST00000441182 718 ntBASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 AC010141.2-201ENST00000452426 721 ntBASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD3Q3KNS1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD3Q3KNS1 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 ID1-201ENST00000376105 1233 ntBASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD3Q3KNS1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms