Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.83■□□□□ 0.93
TREX1Q9NSU2 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.83■□□□□ 0.93
TREX1Q9NSU2 DUX4L6-201ENST00000626483 1275 ntBASIC20.83■□□□□ 0.93
TREX1Q9NSU2 DUX4L1-201ENST00000627662 1275 ntBASIC20.83■□□□□ 0.93
TREX1Q9NSU2 DUX4L8-201ENST00000629013 1275 ntBASIC20.83■□□□□ 0.93
TREX1Q9NSU2 DUX4L3-201ENST00000630187 1275 ntBASIC20.83■□□□□ 0.93
TREX1Q9NSU2 DUX4L7-201ENST00000630678 1275 ntBASIC20.83■□□□□ 0.93
TREX1Q9NSU2 DUX4L5-201ENST00000630834 1275 ntBASIC20.83■□□□□ 0.93
TREX1Q9NSU2 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.83■□□□□ 0.93
TREX1Q9NSU2 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TREX1Q9NSU2 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TREX1Q9NSU2 AL157384.1-201ENST00000445995 2473 ntBASIC20.83■□□□□ 0.92
TREX1Q9NSU2 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 AC004854.2-201ENST00000608450 1441 ntBASIC20.82■□□□□ 0.92
TREX1Q9NSU2 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 RARRES2P11-201ENST00000635158 484 ntBASIC20.82■□□□□ 0.92
TREX1Q9NSU2 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TREX1Q9NSU2 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 AP001160.3-201ENST00000601484 763 ntBASIC20.81■□□□□ 0.92
TREX1Q9NSU2 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.81■□□□□ 0.92
TREX1Q9NSU2 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 KRT18P61-201ENST00000585825 1298 ntBASIC20.8■□□□□ 0.92
TREX1Q9NSU2 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TREX1Q9NSU2 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 SLC7A5P2-201ENST00000553010 536 ntBASIC20.79■□□□□ 0.92
TREX1Q9NSU2 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 AC011484.1-201ENST00000377652 1995 ntBASIC20.79■□□□□ 0.92
TREX1Q9NSU2 FEM1AP1-201ENST00000431297 1995 ntBASIC20.79■□□□□ 0.92
TREX1Q9NSU2 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TREX1Q9NSU2 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
TREX1Q9NSU2 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TREX1Q9NSU2 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TREX1Q9NSU2 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TREX1Q9NSU2 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
TREX1Q9NSU2 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
TREX1Q9NSU2 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
TREX1Q9NSU2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms