Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.3■□□□□ 0.84
PKP4Q99569 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.3■□□□□ 0.84
PKP4Q99569 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.3■□□□□ 0.84
PKP4Q99569 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.3■□□□□ 0.84
PKP4Q99569 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.3■□□□□ 0.84
PKP4Q99569 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.3■□□□□ 0.84
PKP4Q99569 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PKP4Q99569 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PKP4Q99569 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.3■□□□□ 0.84
PKP4Q99569 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.3■□□□□ 0.84
PKP4Q99569 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PKP4Q99569 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
PKP4Q99569 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.29■□□□□ 0.84
PKP4Q99569 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.29■□□□□ 0.84
PKP4Q99569 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.29■□□□□ 0.84
PKP4Q99569 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.29■□□□□ 0.84
PKP4Q99569 UBE2DNL-204ENST00000602536 740 ntBASIC20.29■□□□□ 0.84
PKP4Q99569 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PKP4Q99569 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.29■□□□□ 0.84
PKP4Q99569 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
PKP4Q99569 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PKP4Q99569 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
PKP4Q99569 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PKP4Q99569 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PKP4Q99569 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.28■□□□□ 0.84
PKP4Q99569 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
PKP4Q99569 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PKP4Q99569 AC137761.2-201ENST00000561729 223 ntBASIC20.28■□□□□ 0.84
PKP4Q99569 AC145350.3-201ENST00000569033 163 ntBASIC20.28■□□□□ 0.84
PKP4Q99569 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PKP4Q99569 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PKP4Q99569 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PKP4Q99569 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
PKP4Q99569 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PKP4Q99569 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.28■□□□□ 0.84
PKP4Q99569 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.27■□□□□ 0.84
PKP4Q99569 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
PKP4Q99569 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PKP4Q99569 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.27■□□□□ 0.84
PKP4Q99569 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PKP4Q99569 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PKP4Q99569 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PKP4Q99569 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.27■□□□□ 0.84
PKP4Q99569 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.27■□□□□ 0.84
PKP4Q99569 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PKP4Q99569 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.27■□□□□ 0.84
PKP4Q99569 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PKP4Q99569 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PKP4Q99569 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.27■□□□□ 0.83
PKP4Q99569 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PKP4Q99569 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.26■□□□□ 0.83
PKP4Q99569 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKP4Q99569 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PKP4Q99569 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PKP4Q99569 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKP4Q99569 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.26■□□□□ 0.83
PKP4Q99569 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.26■□□□□ 0.83
PKP4Q99569 SLC7A5P1-201ENST00000568957 537 ntBASIC20.26■□□□□ 0.83
PKP4Q99569 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.26■□□□□ 0.83
PKP4Q99569 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.26■□□□□ 0.83
PKP4Q99569 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
PKP4Q99569 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKP4Q99569 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKP4Q99569 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.26■□□□□ 0.83
PKP4Q99569 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PKP4Q99569 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKP4Q99569 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PKP4Q99569 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.26■□□□□ 0.83
PKP4Q99569 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.26■□□□□ 0.83
PKP4Q99569 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKP4Q99569 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.25■□□□□ 0.83
PKP4Q99569 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PKP4Q99569 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
PKP4Q99569 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PKP4Q99569 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PKP4Q99569 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.25■□□□□ 0.83
PKP4Q99569 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.25■□□□□ 0.83
PKP4Q99569 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.25■□□□□ 0.83
PKP4Q99569 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.25■□□□□ 0.83
PKP4Q99569 RARRES2P11-201ENST00000635158 484 ntBASIC20.25■□□□□ 0.83
PKP4Q99569 MYCNOS-205ENST00000641950 531 ntBASIC20.25■□□□□ 0.83
PKP4Q99569 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKP4Q99569 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKP4Q99569 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKP4Q99569 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PKP4Q99569 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.24■□□□□ 0.83
PKP4Q99569 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.24■□□□□ 0.83
PKP4Q99569 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.24■□□□□ 0.83
PKP4Q99569 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
PKP4Q99569 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
PKP4Q99569 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.24■□□□□ 0.83
PKP4Q99569 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.24■□□□□ 0.83
PKP4Q99569 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.24■□□□□ 0.83
PKP4Q99569 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.24■□□□□ 0.83
PKP4Q99569 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PKP4Q99569 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PKP4Q99569 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.24■□□□□ 0.83
PKP4Q99569 AC022517.1-201ENST00000592429 346 ntBASIC20.24■□□□□ 0.83
PKP4Q99569 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.24■□□□□ 0.83
PKP4Q99569 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms