Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.86■□□□□ 0.93
VPS39Q96JC1 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS39Q96JC1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS39Q96JC1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
VPS39Q96JC1 PLK5-205ENST00000642079 1969 ntBASIC20.86■□□□□ 0.93
VPS39Q96JC1 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS39Q96JC1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS39Q96JC1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
VPS39Q96JC1 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS39Q96JC1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS39Q96JC1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS39Q96JC1 AC006128.1-201ENST00000624704 1661 ntBASIC20.86■□□□□ 0.93
VPS39Q96JC1 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS39Q96JC1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
VPS39Q96JC1 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS39Q96JC1 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS39Q96JC1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
VPS39Q96JC1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS39Q96JC1 FEM1AP1-201ENST00000431297 1995 ntBASIC20.85■□□□□ 0.93
VPS39Q96JC1 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS39Q96JC1 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS39Q96JC1 SLC25A24-204ENST00000569674 2357 ntBASIC20.85■□□□□ 0.93
VPS39Q96JC1 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
VPS39Q96JC1 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS39Q96JC1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS39Q96JC1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS39Q96JC1 AL031432.3-201ENST00000607698 485 ntBASIC20.85■□□□□ 0.93
VPS39Q96JC1 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.85■□□□□ 0.93
VPS39Q96JC1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS39Q96JC1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS39Q96JC1 LINC01006-201ENST00000333319 2292 ntBASIC20.85■□□□□ 0.93
VPS39Q96JC1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS39Q96JC1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS39Q96JC1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS39Q96JC1 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS39Q96JC1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS39Q96JC1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS39Q96JC1 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS39Q96JC1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS39Q96JC1 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 AL136967.2-201ENST00000623968 743 ntBASIC20.84■□□□□ 0.93
VPS39Q96JC1 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS39Q96JC1 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS39Q96JC1 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS39Q96JC1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS39Q96JC1 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS39Q96JC1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
VPS39Q96JC1 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS39Q96JC1 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS39Q96JC1 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.83■□□□□ 0.93
VPS39Q96JC1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS39Q96JC1 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS39Q96JC1 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.83■□□□□ 0.93
VPS39Q96JC1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS39Q96JC1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS39Q96JC1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS39Q96JC1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.83■□□□□ 0.93
VPS39Q96JC1 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS39Q96JC1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.83■□□□□ 0.93
VPS39Q96JC1 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS39Q96JC1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.83■□□□□ 0.93
VPS39Q96JC1 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.83■□□□□ 0.93
VPS39Q96JC1 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
VPS39Q96JC1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.83■□□□□ 0.92
VPS39Q96JC1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
VPS39Q96JC1 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS39Q96JC1 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS39Q96JC1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS39Q96JC1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS39Q96JC1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS39Q96JC1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS39Q96JC1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS39Q96JC1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS39Q96JC1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS39Q96JC1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS39Q96JC1 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS39Q96JC1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS39Q96JC1 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS39Q96JC1 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS39Q96JC1 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
VPS39Q96JC1 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms