Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.92■□□□□ 0.94
CXCL12P48061 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL12P48061 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.92■□□□□ 0.94
CXCL12P48061 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
CXCL12P48061 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CXCL12P48061 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL12P48061 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CXCL12P48061 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL12P48061 AC012618.2-201ENST00000428058 849 ntBASIC20.92■□□□□ 0.94
CXCL12P48061 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.92■□□□□ 0.94
CXCL12P48061 BX088651.1-201ENST00000540551 451 ntBASIC20.92■□□□□ 0.94
CXCL12P48061 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.92■□□□□ 0.94
CXCL12P48061 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CXCL12P48061 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL12P48061 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.92■□□□□ 0.94
CXCL12P48061 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL12P48061 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CXCL12P48061 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL12P48061 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.92■□□□□ 0.94
CXCL12P48061 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CXCL12P48061 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CXCL12P48061 AC007322.3-201ENST00000426526 701 ntBASIC20.91■□□□□ 0.94
CXCL12P48061 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.91■□□□□ 0.94
CXCL12P48061 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.91■□□□□ 0.94
CXCL12P48061 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 KRT18P21-201ENST00000515767 1272 ntBASIC20.91■□□□□ 0.94
CXCL12P48061 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.91■□□□□ 0.94
CXCL12P48061 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.91■□□□□ 0.94
CXCL12P48061 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.91■□□□□ 0.94
CXCL12P48061 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.91■□□□□ 0.94
CXCL12P48061 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.91■□□□□ 0.94
CXCL12P48061 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CXCL12P48061 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL12P48061 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL12P48061 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL12P48061 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL12P48061 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL12P48061 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.9■□□□□ 0.94
CXCL12P48061 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL12P48061 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.9■□□□□ 0.94
CXCL12P48061 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.9■□□□□ 0.94
CXCL12P48061 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.9■□□□□ 0.94
CXCL12P48061 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL12P48061 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.9■□□□□ 0.94
CXCL12P48061 AC233702.5-201ENST00000584107 538 ntBASIC20.9■□□□□ 0.94
CXCL12P48061 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.9■□□□□ 0.94
CXCL12P48061 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.9■□□□□ 0.94
CXCL12P48061 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL12P48061 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CXCL12P48061 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CXCL12P48061 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CXCL12P48061 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CXCL12P48061 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CXCL12P48061 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CXCL12P48061 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
CXCL12P48061 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
CXCL12P48061 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CXCL12P48061 RPS2P55-201ENST00000397318 883 ntBASIC20.89■□□□□ 0.93
CXCL12P48061 AC107956.1-201ENST00000494359 873 ntBASIC20.89■□□□□ 0.93
CXCL12P48061 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.89■□□□□ 0.93
CXCL12P48061 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.89■□□□□ 0.93
CXCL12P48061 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
CXCL12P48061 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CXCL12P48061 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CXCL12P48061 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CXCL12P48061 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CXCL12P48061 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.88■□□□□ 0.93
CXCL12P48061 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CXCL12P48061 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.88■□□□□ 0.93
CXCL12P48061 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CXCL12P48061 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CXCL12P48061 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.88■□□□□ 0.93
CXCL12P48061 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.87■□□□□ 0.93
CXCL12P48061 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL12P48061 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL12P48061 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.87■□□□□ 0.93
CXCL12P48061 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL12P48061 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL12P48061 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.87■□□□□ 0.93
CXCL12P48061 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL12P48061 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CXCL12P48061 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.87■□□□□ 0.93
CXCL12P48061 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.87■□□□□ 0.93
CXCL12P48061 AP001412.1-201ENST00000608405 714 ntBASIC20.87■□□□□ 0.93
CXCL12P48061 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL12P48061 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CXCL12P48061 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL12P48061 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL12P48061 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL12P48061 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.86■□□□□ 0.93
CXCL12P48061 TSPY7P-201ENST00000431358 1114 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms