Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 PNMA6B-201ENST00000538162 1200 ntBASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.31■□□□□ 0.36
CSPG4Q6UVK1 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 C9orf163-202ENST00000624034 2573 ntBASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 AC079089.2-201ENST00000531211 1277 ntBASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.3■□□□□ 0.36
CSPG4Q6UVK1 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 AC097493.4-201ENST00000641197 219 ntBASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CSPG4Q6UVK1 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 AC087742.1-201ENST00000575880 1738 ntBASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 FAM197Y4-202ENST00000622692 608 ntBASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CSPG4Q6UVK1 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CSPG4Q6UVK1 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CSPG4Q6UVK1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.27■□□□□ 0.36
CSPG4Q6UVK1 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CSPG4Q6UVK1 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CSPG4Q6UVK1 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CSPG4Q6UVK1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.27■□□□□ 0.36
CSPG4Q6UVK1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CSPG4Q6UVK1 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CSPG4Q6UVK1 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CSPG4Q6UVK1 AC060766.5-201ENST00000590539 871 ntBASIC17.27■□□□□ 0.35
CSPG4Q6UVK1 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.27■□□□□ 0.35
CSPG4Q6UVK1 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CSPG4Q6UVK1 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CSPG4Q6UVK1 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CSPG4Q6UVK1 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.27■□□□□ 0.35
CSPG4Q6UVK1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
CSPG4Q6UVK1 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CSPG4Q6UVK1 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 AL049637.2-201ENST00000641778 930 ntBASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms